JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VWA3B_chr2_98082167_98318299	1/0	a0018	1294	1	0	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0019	1294	1	0	1	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0020	742	1	0	1	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0021	1294	1	0	0	0	1	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0022	1294	1	0	0	0	0	1	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0023	1294	1	0	0	1	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0024	1294	1	1	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0025	1294	1	0	0	1	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	a0026	571	1	1	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA5A_chr11_124110450_124152721	1/1	a0001	786	325	47	62	170	13	31	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	a0002	786	36	14	2	11	5	4	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	a0003	786	31	16	3	12	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	a0004	786	6	6	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	a0005	786	5	0	4	0	0	1	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	a0006	786	4	3	1	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	a0007	786	3	0	0	0	0	3	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	a0008	786	2	2	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	a0009	786	2	1	1	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	a0010	786	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	a0011	786	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	a0012	786	1	0	0	0	0	1	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	a0013	786	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	a0014	786	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	a0015	786	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	a0016	786	1	0	1	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	a0017	786	1	0	0	1	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	a0018	786	1	0	0	1	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	a0019	786	1	0	0	1	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5B1_chr1_20285875_20364518	1/0	a0001	1215	158	31	41	63	4	18	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0002	1215	64	1	13	36	5	9	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0003	1215	17	0	3	12	1	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0004	1215	16	14	2	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0005	1215	10	1	8	0	0	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0006	1215	9	9	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/1	a0007	1215	6	1	2	1	0	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0008	1215	6	5	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0009	1215	5	1	2	0	0	2	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0010	1215	5	4	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0011	1215	4	4	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0012	1215	4	4	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0013	1215	3	0	0	0	2	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0014	1215	3	0	0	3	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0015	1215	2	0	0	2	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0016	1215	2	2	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0017	1215	1	0	0	1	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0018	1215	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0019	1215	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0020	449	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0021	1215	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0022	1215	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518