JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VWA5B1_chr1_20285875_20364518	0/0	a0023	1215	1	0	0	1	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0024	1215	1	0	0	0	0	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0025	1215	1	0	0	0	0	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0026	1215	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0027	1215	1	0	0	1	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0028	1215	1	0	0	0	0	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0029	1215	1	0	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	a0030	1215	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B2_chr3_184224585_184247329	1/0	a0001	1242	180	34	35	83	10	17	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/1	a0002	1242	93	17	15	42	5	13	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0003	1242	19	4	1	14	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0004	1242	16	13	3	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0005	1242	7	7	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0006	1242	3	1	2	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0007	1242	3	0	3	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0008	1242	2	2	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0009	1242	2	2	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0010	1242	2	0	2	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0011	1242	2	2	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0012	1242	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0013	1242	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0014	1242	1	0	1	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0015	1242	1	0	0	1	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0016	1242	1	0	0	0	1	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0017	1242	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0018	1242	1	0	1	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0019	1242	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0020	1242	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0021	1242	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0022	1242	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0023	1242	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	a0024	1242	1	0	1	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA7_chr6_31760590_31782328	0/1	a0001	891	359	62	69	170	15	42	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0002	891	14	10	0	4	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0003	891	7	2	3	0	2	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0004	436	6	1	3	0	1	1	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0005	891	5	3	0	2	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0006	891	4	4	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0007	891	4	3	1	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0008	891	4	0	0	1	0	3	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0009	891	3	0	1	2	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0010	891	3	1	1	1	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0011	891	1	1	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0012	891	1	1	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0013	891	1	0	0	1	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0014	891	1	1	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0015	436	1	0	1	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0016	891	1	1	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0017	891	1	0	0	1	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0018	891	1	1	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328