JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BTAF1_chr10_91918770_92036437	0/0	a0007	1849	1	0	0	0	0	1	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	a0008	1849	1	0	0	1	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTBD10_chr11_13383008_13468222	1/1	a0001	475	351	88	57	156	12	36	copy fasta	BTBD10	chr11	13383008	13468222
BTBD10_chr11_13383008_13468222	0/0	a0002	475	4	3	1	0	0	0	copy fasta	BTBD10	chr11	13383008	13468222
BTBD10_chr11_13383008_13468222	0/0	a0003	475	1	1	0	0	0	0	copy fasta	BTBD10	chr11	13383008	13468222
BTBD16_chr10_122266296_122343159	0/1	a0001	506	98	12	13	55	4	13	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	1/0	a0002	506	81	10	27	21	8	14	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	a0003	506	52	0	8	40	1	3	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	a0004	506	47	36	7	0	2	2	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	a0005	506	40	4	7	22	3	4	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	a0006	506	24	23	0	0	0	1	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	a0007	506	23	0	5	16	0	2	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	a0008	506	5	0	0	5	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	a0009	506	4	4	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	a0010	506	2	0	0	2	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	a0011	506	1	0	0	1	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	a0012	506	1	0	0	0	0	1	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	a0013	506	1	1	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	a0014	506	1	1	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	a0015	506	1	0	1	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	a0016	506	1	1	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD17_chr17_74351416_74366868	1/0	a0001	478	400	90	63	194	11	41	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/1	a0002	478	38	4	19	6	2	6	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	a0003	478	1	0	0	0	1	0	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	a0004	478	1	0	1	0	0	0	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	a0005	478	1	0	1	0	0	0	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	a0006	478	1	0	0	0	0	1	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	a0007	478	1	0	0	1	0	0	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	a0008	478	1	0	0	1	0	0	copy fasta	BTBD17	chr17	74351416	74366868
BTBD18_chr11_57738514_57756819	1/1	a0001	712	340	84	68	134	14	38	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	a0002	712	7	0	0	7	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	a0003	712	2	2	0	0	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	a0004	712	1	0	0	1	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	a0005	712	1	0	0	1	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	a0006	712	1	1	0	0	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	a0007	712	1	1	0	0	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	a0008	712	1	0	0	1	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD19_chr1_44803523_44820585	1/1	a0001	291	432	97	73	196	18	46	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	a0002	291	1	1	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	a0003	291	1	0	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	a0004	291	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	a0005	291	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD1_chr15_83011423_83072252	1/1	a0001	482	321	94	59	114	12	40	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	a0002	482	4	3	1	0	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	a0003	482	1	0	0	1	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	a0004	482	1	0	0	1	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	a0005	482	1	1	0	0	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD2_chr19_1980448_2020714	0/1	a0001	524	123	24	30	43	9	16	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	a0002	521	98	18	12	53	4	11	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	a0003	523	89	32	18	31	1	7	copy fasta	BTBD2	chr19	1980448	2020714