JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VWF_chr12_5943877_6129670	0/0	a0081	2813	1	0	0	0	0	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0082	2813	1	0	0	1	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0083	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0084	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0085	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0086	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0087	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0088	2813	1	0	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0089	2813	1	0	0	1	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0090	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0091	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0092	2813	1	0	0	0	0	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0093	2813	1	0	0	1	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0094	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0095	2813	1	0	0	0	0	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0096	2813	1	0	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0097	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0098	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0099	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0100	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0101	2813	1	0	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0102	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/1	a0103	2813	1	0	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0104	2813	1	0	0	0	0	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0105	2813	1	0	0	0	0	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0106	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0107	2813	1	0	0	1	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0108	2813	1	0	0	0	0	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0109	2813	1	0	0	1	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0110	2813	1	0	0	0	0	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0111	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0112	2813	1	0	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0113	2813	1	0	0	1	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0114	2813	1	0	0	0	1	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0115	2813	1	0	0	0	0	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0116	2813	1	0	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0117	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0118	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0119	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0120	2813	1	0	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	a0121	2813	1	1	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VXN_chr8_66488566_66523524	1/1	a0001	207	324	90	67	124	11	30	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	a0002	207	6	0	3	0	3	0	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	a0003	207	2	2	0	0	0	0	copy fasta	VXN	chr8	66488566	66523524
WAC_chr10_28528118_28628112	1/1	a0001	647	317	83	67	126	12	27	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	a0002	647	4	3	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	a0003	647	1	0	0	0	0	1	copy fasta	WAC	chr10	28528118	28628112
WAPL_chr10_86430256_86526792	1/1	a0001	1190	348	85	63	163	10	25	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	a0002	1190	57	3	8	28	4	14	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	a0003	1190	1	0	0	0	1	0	copy fasta	WAPL	chr10	86430256	86526792