JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WAPL_chr10_86430256_86526792	0/0	a0004	1190	1	0	0	0	0	1	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	a0005	1190	1	0	0	1	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	a0006	1190	1	0	0	0	1	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	a0007	1190	1	0	1	0	0	0	copy fasta	WAPL	chr10	86430256	86526792
WARS1_chr14_100328790_100380347	1/1	a0001	471	331	95	46	144	14	30	copy fasta	WARS1	chr14	100328790	100380347
WARS1_chr14_100328790_100380347	0/0	a0002	471	4	0	0	4	0	0	copy fasta	WARS1	chr14	100328790	100380347
WARS1_chr14_100328790_100380347	0/0	a0003	471	3	3	0	0	0	0	copy fasta	WARS1	chr14	100328790	100380347
WARS2_chr1_119026216_119145653	1/0	a0001	360	282	70	56	118	6	31	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/1	a0002	360	64	15	4	42	1	1	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	a0003	360	4	4	0	0	0	0	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	a0004	360	2	1	0	0	1	0	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	a0005	360	1	0	0	1	0	0	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	a0006	360	1	0	0	1	0	0	copy fasta	WARS2	chr1	119026216	119145653
WASF1_chr6_110094819_110184670	1/1	a0001	559	259	81	46	98	8	24	copy fasta	WASF1	chr6	110094819	110184670
WASF1_chr6_110094819_110184670	0/0	a0002	559	1	1	0	0	0	0	copy fasta	WASF1	chr6	110094819	110184670
WASF1_chr6_110094819_110184670	0/0	a0003	559	1	0	0	1	0	0	copy fasta	WASF1	chr6	110094819	110184670
WASF1_chr6_110094819_110184670	0/0	a0004	559	1	0	0	1	0	0	copy fasta	WASF1	chr6	110094819	110184670
WASF2_chr1_27399230_27495167	1/1	a0001	498	257	81	42	96	8	28	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	a0002	498	3	3	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF3_chr13_26552683_26693948	1/1	a0001	502	270	69	58	104	10	27	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	a0002	502	20	8	4	7	0	1	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	a0003	502	2	2	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	a0004	502	1	0	0	1	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	a0005	502	1	1	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASHC2A_chr10_50062954_50138509	0/0	a0001	1341	79	4	10	53	1	11	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/1	a0002	1341	61	2	13	35	4	6	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	1/0	a0003	1341	32	22	3	6	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0004	1341	32	1	20	9	0	2	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0005	1341	15	0	0	15	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0006	1341	15	13	2	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0007	1341	11	10	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0008	1341	7	0	5	2	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0009	1341	5	4	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0010	1341	4	0	0	4	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0011	1341	3	0	0	3	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0012	1340	3	0	0	3	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0013	1341	3	2	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0014	1341	3	2	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0015	1341	3	1	0	0	0	2	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0016	1341	2	0	0	0	0	2	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0017	1341	2	0	1	0	0	1	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0018	1341	2	1	0	0	1	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0019	22	1	0	0	0	1	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0020	1341	1	0	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0021	1341	1	0	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0022	1349	1	0	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0023	1341	1	0	0	0	0	1	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0024	1341	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0025	1341	1	0	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0026	1341	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509