JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WASHC2A_chr10_50062954_50138509	0/0	a0027	1341	1	0	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0028	1341	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0029	1341	1	0	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0030	1312	1	0	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0031	1341	1	0	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0032	1341	1	0	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0033	1341	1	0	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0034	1341	1	0	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0035	1341	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0036	1341	1	0	0	0	0	1	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0037	1341	1	0	0	0	1	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0038	1341	1	0	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0039	1341	1	0	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0040	1341	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0041	1341	1	0	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0042	1341	1	0	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0043	1341	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0044	1341	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0045	1341	1	0	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	a0046	1341	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2C_chr10_45722266_45797964	0/0	a0001	1341	86	11	8	54	1	12	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0002	1341	86	13	27	27	6	13	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	1/0	a0003	1341	38	7	3	21	0	6	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/1	a0004	1341	33	1	17	9	2	3	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0005	1341	27	1	0	21	3	2	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0006	1341	17	1	3	12	0	1	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0007	1341	13	11	2	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0008	1341	12	1	3	8	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0009	1341	11	10	1	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0010	1341	11	5	1	5	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0011	1341	7	6	1	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0012	1341	4	0	1	0	3	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0013	1341	4	3	1	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0014	1341	3	0	0	3	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0015	1341	3	3	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0016	1340	3	0	0	3	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0017	1341	2	2	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0018	1341	2	0	0	1	0	1	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0019	1341	2	1	1	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0020	1341	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0021	1341	1	0	0	1	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0022	1341	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0023	1341	1	0	1	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0024	1341	1	0	0	0	1	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0025	1341	1	0	0	1	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0026	1341	1	0	0	0	0	1	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0027	1341	1	0	0	0	0	1	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0028	1341	1	0	1	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0029	1341	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0030	1341	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964