JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WASHC2C_chr10_45722266_45797964	0/0	a0031	1341	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0032	1341	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0033	1341	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0034	1341	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	a0035	1341	1	0	1	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC3_chr12_102007840_102066991	1/1	a0001	194	356	94	58	164	10	28	copy fasta	WASHC3	chr12	102007840	102066991
WASHC4_chr12_105102731_105174130	0/1	a0001	1173	370	82	69	172	8	38	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	1/0	a0002	1173	7	0	2	0	4	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	a0003	1173	4	0	0	4	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	a0004	1173	3	2	1	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	a0005	1173	2	0	2	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	a0006	1173	2	0	0	2	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	a0007	1173	2	2	0	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	a0008	1173	1	0	1	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	a0009	1173	1	1	0	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	a0010	1173	1	0	0	1	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	a0011	1173	1	0	1	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	a0012	1173	1	1	0	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	a0013	1173	1	0	0	1	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC5_chr8_125019260_125096792	1/1	a0001	1159	342	84	59	152	14	31	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	a0002	1159	4	2	2	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	a0003	1159	1	0	0	1	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	a0004	1159	1	1	0	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	a0005	1159	1	0	0	1	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	a0006	1159	1	0	1	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	a0007	1159	1	0	0	0	0	1	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	a0008	1159	1	1	0	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASL_chr7_123676943_123754003	1/1	a0001	505	355	88	60	151	14	40	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	a0002	505	1	0	0	1	0	0	copy fasta	WASL	chr7	123676943	123754003
WAS_chrX_48678799_48696427	1/1	a0001	502	259	73	51	98	11	24	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	a0002	502	6	0	0	6	0	0	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	a0003	334	3	0	0	2	0	1	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	a0004	259	1	0	0	1	0	0	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	a0005	493	1	1	0	0	0	0	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	a0006	493	1	0	0	1	0	0	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	a0007	493	1	0	0	0	0	1	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	a0008	334	1	0	0	1	0	0	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	a0009	502	1	0	1	0	0	0	copy fasta	WAS	chrX	48678799	48696427
WBP11_chr12_14779582_14808478	1/1	a0001	641	374	83	79	148	16	46	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	a0002	641	9	0	0	9	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	a0003	641	1	0	0	1	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	a0004	641	1	0	1	0	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	a0005	641	1	1	0	0	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP1L_chr10_102738948_102821262	1/0	a0001	363	149	35	33	66	5	9	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	a0002	363	138	40	27	47	6	18	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/1	a0003	363	70	3	16	40	1	9	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	a0004	363	2	2	0	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	a0005	363	1	0	0	1	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1_chr2_74453438_74465881	1/1	a0001	269	337	89	72	124	16	34	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	a0002	269	4	0	4	0	0	0	copy fasta	WBP1	chr2	74453438	74465881