JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WBP1_chr2_74453438_74465881	0/0	a0003	269	1	0	0	1	0	0	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	a0004	269	1	0	0	1	0	0	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	a0005	269	1	1	0	0	0	0	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	a0006	269	1	1	0	0	0	0	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	a0007	269	1	1	0	0	0	0	copy fasta	WBP1	chr2	74453438	74465881
WBP2NL_chr22_41993788_42033475	0/0	a0001	309	197	23	22	128	4	20	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	1/1	a0002	309	86	6	25	27	9	17	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	a0003	309	73	42	24	0	5	2	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	a0004	309	12	12	0	0	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	a0005	309	9	8	1	0	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	a0006	309	3	0	0	3	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	a0007	309	2	2	0	0	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	a0008	309	1	1	0	0	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	a0009	309	1	0	0	1	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	a0010	309	1	0	0	1	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	a0011	309	1	0	0	0	0	1	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	a0012	309	1	0	0	1	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	a0013	119	1	0	0	1	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2_chr17_75840699_75860335	1/1	a0001	261	382	94	71	157	18	40	copy fasta	WBP2	chr17	75840699	75860335
WBP2_chr17_75840699_75860335	0/0	a0002	261	1	0	0	1	0	0	copy fasta	WBP2	chr17	75840699	75860335
WBP2_chr17_75840699_75860335	0/0	a0003	261	1	0	1	0	0	0	copy fasta	WBP2	chr17	75840699	75860335
WBP4_chr13_41056509_41089006	1/1	a0001	376	412	84	67	205	14	40	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	a0002	376	4	4	0	0	0	0	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	a0003	376	2	0	0	2	0	0	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	a0004	376	1	0	0	1	0	0	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	a0005	376	1	0	1	0	0	0	copy fasta	WBP4	chr13	41056509	41089006
WDCP_chr2_24024347_24052391	1/0	a0001	721	282	73	62	94	15	37	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/1	a0002	721	34	11	6	6	3	7	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	a0003	721	2	0	2	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	a0004	721	1	1	0	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	a0005	721	1	0	1	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	a0006	721	1	0	1	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	a0007	721	1	0	0	1	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	a0008	721	1	1	0	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	a0009	721	1	0	0	1	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	a0010	721	1	0	1	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	a0011	721	1	0	1	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDFY1_chr2_223870348_223950335	1/1	a0001	410	376	89	49	196	6	34	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	a0002	410	1	1	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	a0003	410	1	0	1	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	a0004	410	1	1	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	a0005	410	1	1	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY2_chr13_51579462_51772709	1/1	a0001	400	271	78	51	98	14	28	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	a0002	400	5	0	5	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	a0003	400	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	a0004	400	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY3_chr4_84664597_84971690	1/1	a0001	3526	235	71	48	71	10	33	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	a0002	3526	2	0	0	2	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	a0003	3526	2	0	0	2	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	a0004	3526	1	0	0	1	0	0	copy fasta	WDFY3	chr4	84664597	84971690