JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WDFY4_chr10_48679873_48987956	0/0	a0049	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0050	3184	1	0	0	1	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0051	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0052	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0053	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0054	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0055	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0056	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0057	3184	1	0	0	1	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0058	3184	1	0	0	1	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0059	3184	1	0	0	1	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0060	3184	1	0	0	0	0	1	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0061	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0062	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0063	3184	1	0	0	1	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0064	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0065	3184	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0066	3184	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0067	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0068	3184	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0069	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0070	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0071	3184	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0072	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0073	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0074	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0075	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0076	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0077	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0078	3184	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0079	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0080	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0081	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0082	3184	1	0	0	0	0	1	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0083	3184	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0084	3184	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0085	3184	1	0	0	1	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0086	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0087	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0088	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	1/0	a0089	3184	1	0	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0090	3184	1	0	0	1	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0091	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0092	3184	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0093	3184	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0094	3184	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	a0095	3184	1	0	0	0	0	1	copy fasta	WDFY4	chr10	48679873	48987956
WDHD1_chr14_54933949_55032099	1/1	a0001	1129	238	56	60	83	11	26	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	a0002	1129	14	11	0	1	0	2	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	a0003	1129	6	4	0	2	0	0	copy fasta	WDHD1	chr14	54933949	55032099