JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BTBD2_chr19_1980448_2020714	1/0	a0004	525	21	6	4	7	1	2	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	a0005	522	20	12	3	3	0	2	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	a0006	519	2	0	0	2	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	a0007	518	2	1	0	0	0	1	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	a0008	521	1	0	0	0	1	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	a0009	529	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	a0010	522	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	a0011	521	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	a0012	521	1	0	1	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	a0013	520	1	1	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	a0014	142	1	0	0	0	0	1	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	a0015	142	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	a0016	523	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD3_chr20_11912893_11931595	1/1	a0001	522	438	93	81	210	12	40	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	a0002	184	1	0	0	1	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	a0003	522	1	0	0	1	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	a0004	522	1	0	0	1	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	a0005	522	1	0	1	0	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	a0006	522	1	1	0	0	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	a0007	522	1	0	0	1	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD6_chr14_105243533_105256093	1/1	a0001	538	263	68	54	100	14	25	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	a0002	538	7	6	1	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	a0003	538	5	4	1	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	a0004	538	1	0	0	0	0	1	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	a0005	538	1	1	0	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	a0006	538	1	1	0	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD7_chr14_93232550_93338036	0/0	a0001	1132	340	79	68	153	14	26	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/1	a0002	1132	25	13	1	6	1	3	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	a0003	1132	4	0	0	4	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	a0004	1132	1	0	0	0	1	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	a0005	1132	1	0	1	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	a0006	1132	1	0	0	1	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	a0007	1132	1	1	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	a0008	1132	1	1	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	a0009	1132	1	0	0	0	0	1	copy fasta	BTBD7	chr14	93232550	93338036
BTBD8_chr1_92075345_92189723	0/0	a0001	1792	96	43	16	19	4	14	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	a0002	1792	30	1	11	8	3	7	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	a0003	1792	13	12	1	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/1	a0004	1792	5	1	2	0	0	1	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	a0005	1792	4	4	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	a0006	1792	2	0	0	1	1	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	a0007	1792	2	2	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	a0008	1792	2	2	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	1/0	a0009	1792	1	0	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	a0010	1792	1	1	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	a0011	1792	1	1	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	a0012	1792	1	1	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD9_chr6_38163451_38644929	1/1	a0001	612	223	67	48	74	10	22	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	a0002	612	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTC_chr4_74739759_74799523	1/0	a0001	178	235	28	45	132	8	21	copy fasta	BTC	chr4	74739759	74799523