JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WDR24_chr16_679622_695398	1/1	a0001	790	371	91	72	145	12	49	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	a0002	790	2	1	1	0	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	a0003	790	1	0	1	0	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	a0004	790	1	1	0	0	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	a0005	790	1	0	0	0	0	1	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	a0006	790	1	1	0	0	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	a0007	790	1	0	0	1	0	0	copy fasta	WDR24	chr16	679622	695398
WDR25_chr14_100371485_100535303	0/0	a0001	544	114	44	17	36	5	12	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	a0002	544	85	28	9	37	5	6	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	a0003	544	24	10	1	13	0	0	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	a0004	544	2	2	0	0	0	0	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	a0005	544	2	2	0	0	0	0	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	a0006	544	1	0	1	0	0	0	copy fasta	WDR25	chr14	100371485	100535303
WDR26_chr1_224380146_224439797	1/1	a0001	661	252	86	56	54	10	44	copy fasta	WDR26	chr1	224380146	224439797
WDR27_chr6_169452212_169707029	0/0	a0001	895	62	6	13	41	0	2	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	1/0	a0002	895	43	21	4	10	1	6	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0003	895	38	9	11	6	1	11	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0004	895	34	13	7	9	2	3	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0005	895	31	2	8	18	1	2	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0006	895	23	0	3	19	0	1	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0007	895	10	8	2	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0008	895	6	0	0	6	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0009	895	4	1	0	3	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0010	895	3	3	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0011	895	3	0	0	3	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0012	895	3	3	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0013	895	2	1	1	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0014	895	2	2	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0015	895	2	0	0	2	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0016	895	2	0	0	2	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0017	895	2	1	0	0	1	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0018	895	2	1	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0019	895	2	2	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0020	895	2	0	0	0	0	2	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0021	895	2	0	2	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0022	895	2	2	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0023	895	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0024	895	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0025	895	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0026	895	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0027	895	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0028	895	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0029	895	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0030	895	1	0	0	0	0	1	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0031	895	1	0	1	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0032	895	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/1	a0033	895	1	0	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0034	895	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0035	895	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	a0036	895	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029