JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WDR31_chr9_113308222_113345275	1/1	a0001	367	338	88	57	154	9	28	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	a0002	367	45	0	2	38	0	5	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	a0003	367	28	0	6	10	3	9	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	a0004	367	2	0	0	2	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	a0005	367	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	a0006	367	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	a0007	367	1	0	1	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR33_chr2_127696027_127816171	1/1	a0001	1336	294	85	54	105	12	36	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	a0002	1336	19	6	7	4	0	2	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	a0003	1336	2	0	0	2	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	a0004	1336	1	1	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	a0005	1336	1	0	1	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	a0006	1336	1	0	0	1	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR35_chr2_19905263_19995105	1/0	a0001	1170	257	72	36	114	10	24	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/1	a0002	1170	54	10	12	20	4	7	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	a0003	1170	53	0	11	33	1	8	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	a0004	1170	13	5	5	2	0	1	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	a0005	1170	5	5	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	a0006	1170	4	0	0	4	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	a0007	1170	2	2	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	a0008	1170	2	0	0	2	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	a0009	1170	1	0	0	1	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	a0010	1170	1	0	0	1	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	a0011	1170	1	1	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	a0012	1170	1	0	1	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	a0013	1170	1	0	1	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	a0014	1170	1	1	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	a0015	1170	1	0	0	0	1	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	a0016	1170	1	0	0	1	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR36_chr5_111087348_111135502	1/0	a0001	895	309	85	51	134	9	29	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/1	a0002	895	95	5	23	52	3	11	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	a0003	895	6	6	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	a0004	895	3	0	0	0	0	3	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	a0005	895	2	0	0	2	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	a0006	895	1	0	0	1	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	a0007	895	1	0	0	1	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	a0008	895	1	0	0	1	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	a0009	895	1	0	0	0	0	1	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	a0010	895	1	0	0	1	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR37_chr10_1051385_1137372	1/1	a0001	494	358	92	62	151	16	35	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	a0002	494	3	0	2	1	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	a0003	494	1	0	0	0	0	1	copy fasta	WDR37	chr10	1051385	1137372
WDR38_chr9_124848460_124862878	0/1	a0001	314	327	80	65	136	14	31	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	a0002	314	57	5	1	46	0	5	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	a0003	314	16	0	8	7	0	1	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	a0004	314	8	8	0	0	0	0	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	1/0	a0005	314	5	3	1	0	0	0	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	a0006	314	1	0	1	0	0	0	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	a0007	314	1	0	0	0	0	1	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	a0008	314	1	0	0	1	0	0	copy fasta	WDR38	chr9	124848460	124862878