JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WDR3_chr1_117924739_117971543	1/1	a0001	943	353	79	59	161	11	41	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	a0002	943	11	2	2	3	0	4	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	a0003	943	5	1	2	0	1	1	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	a0004	943	3	2	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	a0005	943	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	a0006	943	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	a0007	943	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	a0008	943	1	0	1	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	a0009	943	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	a0010	943	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR41_chr5_77425933_77497316	0/0	a0001	459	204	53	43	82	6	20	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	1/1	a0002	459	198	34	31	91	12	28	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	a0003	459	3	0	3	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	a0004	459	2	0	0	2	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	a0005	459	2	1	1	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	a0006	459	1	0	0	1	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	a0007	459	1	0	0	1	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	a0008	459	1	0	0	1	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR43_chr2_28889667_28953219	1/1	a0001	677	328	86	68	126	14	32	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	a0002	677	1	1	0	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	a0003	677	1	1	0	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	a0004	677	1	0	0	1	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	a0005	677	1	0	0	1	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR44_chrX_118341106_118454961	1/1	a0001	913	238	61	32	112	7	24	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	a0002	913	49	11	16	19	0	3	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	a0003	913	1	0	0	1	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	a0004	48	1	0	0	1	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	a0005	353	1	0	0	1	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	a0006	913	1	0	0	1	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	a0007	913	1	0	0	0	0	1	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	a0008	687	1	0	0	1	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR45B_chr17_82609562_82653444	1/1	a0001	344	378	89	74	154	13	46	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	a0002	344	3	3	0	0	0	0	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	a0003	344	1	0	0	0	1	0	copy fasta	WDR45B	chr17	82609562	82653444
WDR45_chrX_49069442_49084887	1/1	a0001	360	260	76	46	97	11	28	copy fasta	WDR45	chrX	49069442	49084887
WDR45_chrX_49069442_49084887	0/0	a0002	360	5	0	4	1	0	0	copy fasta	WDR45	chrX	49069442	49084887
WDR45_chrX_49069442_49084887	0/0	a0003	136	1	0	0	1	0	0	copy fasta	WDR45	chrX	49069442	49084887
WDR45_chrX_49069442_49084887	0/0	a0004	193	1	0	0	1	0	0	copy fasta	WDR45	chrX	49069442	49084887
WDR45_chrX_49069442_49084887	0/0	a0005	339	1	0	0	1	0	0	copy fasta	WDR45	chrX	49069442	49084887
WDR46_chr6_33274108_33294239	0/0	a0001	610	328	91	56	136	16	29	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	a0002	610	32	0	8	17	1	6	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/1	a0003	610	5	1	2	0	1	0	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	a0004	610	2	2	0	0	0	0	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	a0005	610	2	0	0	2	0	0	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	a0006	578	1	1	0	0	0	0	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	a0007	610	1	0	0	1	0	0	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	a0008	610	1	0	0	0	0	1	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	a0009	610	1	1	0	0	0	0	copy fasta	WDR46	chr6	33274108	33294239
WDR47_chr1_108965214_109047102	1/1	a0001	919	334	96	55	130	18	33	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	a0002	919	5	0	5	0	0	0	copy fasta	WDR47	chr1	108965214	109047102