JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WDR47_chr1_108965214_109047102	0/0	a0003	919	2	0	0	2	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	a0004	919	1	0	1	0	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	a0005	919	1	0	0	0	0	1	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	a0006	919	1	0	1	0	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR48_chr3_39047016_39101664	1/1	a0001	677	358	92	52	174	14	24	copy fasta	WDR48	chr3	39047016	39101664
WDR49_chr3_167473684_167658942	1/1	a0001	1049	80	35	16	16	3	8	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	a0002	1049	66	18	14	24	3	7	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	a0003	1049	11	0	0	11	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	a0004	1049	9	4	1	4	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	a0005	1049	8	8	0	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	a0006	1049	7	5	2	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	a0007	1049	7	2	2	3	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	a0008	1049	4	4	0	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	a0009	1049	4	0	0	4	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	a0010	1049	2	0	0	0	0	2	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	a0011	1049	2	1	1	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	a0012	1049	2	0	0	2	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	a0013	1049	2	0	2	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	a0014	1049	1	1	0	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	a0015	1049	1	1	0	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	a0016	1049	1	0	0	0	0	1	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	a0017	1049	1	0	1	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	a0018	1049	1	0	1	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	a0019	1049	1	1	0	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR4_chr21_42844226_42884539	1/0	a0001	412	203	29	42	96	7	28	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/1	a0002	412	85	39	17	20	3	5	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	a0003	412	82	7	7	54	2	12	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	a0004	412	25	11	7	0	4	3	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	a0005	412	2	2	0	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	a0006	412	1	0	1	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	a0007	412	1	1	0	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	a0008	412	1	1	0	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR53_chr3_196549177_196573554	1/1	a0001	358	367	77	72	150	16	50	copy fasta	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	a0002	358	19	17	2	0	0	0	copy fasta	WDR53	chr3	196549177	196573554
WDR54_chr2_74416730_74430755	1/1	a0001	334	387	98	64	178	12	33	copy fasta	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	a0002	334	2	0	1	1	0	0	copy fasta	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	a0003	334	1	1	0	0	0	0	copy fasta	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	a0004	334	1	0	0	1	0	0	copy fasta	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	a0005	334	1	1	0	0	0	0	copy fasta	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	a0006	334	1	0	0	0	0	1	copy fasta	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	a0007	334	1	0	1	0	0	0	copy fasta	WDR54	chr2	74416730	74430755
WDR55_chr5_140659904_140677345	0/0	a0001	383	246	69	39	105	8	25	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/1	a0002	383	93	6	14	54	8	10	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	1/0	a0003	383	17	15	1	0	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	a0004	383	13	0	3	7	0	3	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	a0005	383	9	8	1	0	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	a0006	383	1	0	0	1	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	a0007	383	1	0	0	1	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	a0008	383	1	0	0	1	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	a0009	383	1	0	0	1	0	0	copy fasta	WDR55	chr5	140659904	140677345