JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WDR59_chr16_74866362_74990123	1/1	a0001	974	270	76	45	92	18	37	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	a0002	974	7	7	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	a0003	974	6	6	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	a0004	974	3	3	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	a0005	974	3	2	1	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	a0006	974	2	0	2	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	a0007	435	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	a0008	974	1	0	0	0	0	1	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	a0009	496	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR5B_chr3_122406846_122421062	1/1	a0001	330	463	95	78	225	17	46	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	a0002	54	1	0	0	1	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	a0003	330	1	0	0	0	1	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	a0004	330	1	1	0	0	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5_chr9_134131082_134164968	1/1	a0001	334	404	91	70	183	18	40	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	a0002	334	1	1	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	a0003	334	1	0	0	1	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR62_chr19_36049897_36110108	0/0	a0001	1523	217	41	37	106	10	23	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0002	1523	60	0	12	36	5	7	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	1/0	a0003	1523	36	18	7	0	2	8	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0004	1523	27	0	3	19	0	5	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0005	1523	24	3	3	15	0	3	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/1	a0006	1523	14	3	5	4	0	1	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0007	1523	8	8	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0008	1523	5	4	1	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0009	1523	5	5	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0010	1523	4	0	3	0	1	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0011	1523	4	3	1	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0012	1523	2	0	0	2	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0013	1523	2	2	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0014	1523	2	2	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0015	1523	1	0	0	1	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0016	1523	1	1	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0017	1523	1	0	0	0	0	1	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0018	1523	1	1	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0019	1523	1	0	0	1	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0020	1523	1	1	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0021	1523	1	1	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0022	1523	1	0	0	1	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0023	1523	1	0	0	1	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	a0024	1523	1	1	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR64_chr1_241647281_241807777	1/1	a0001	1091	233	32	42	119	13	25	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	a0002	1091	29	28	1	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	a0003	1091	28	18	5	0	3	2	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	a0004	1091	6	0	1	5	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	a0005	1091	4	0	2	0	2	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	a0006	1091	4	3	1	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	a0007	1091	4	4	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	a0008	1091	4	0	1	3	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	a0009	1091	2	0	2	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	a0010	1091	2	2	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777