JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WDR64_chr1_241647281_241807777	0/0	a0011	1091	2	2	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	a0012	1091	2	2	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	a0013	1091	1	1	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	a0014	1091	1	1	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	a0015	1091	1	1	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	a0016	1091	1	0	0	0	0	1	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	a0017	1091	1	0	0	1	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	a0018	1000	1	0	1	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR6_chr3_49002391_49020951	1/1	a0001	1121	238	84	48	67	18	19	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	a0002	1121	2	0	2	0	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	a0003	1121	2	0	0	0	0	2	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	a0004	1121	1	1	0	0	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	a0005	1121	1	0	0	1	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	a0006	1121	1	1	0	0	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	a0007	1121	1	1	0	0	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	a0008	1121	1	0	0	0	0	1	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	a0009	1121	1	1	0	0	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR70_chr5_37374318_37758435	1/1	a0001	654	241	83	46	80	6	24	copy fasta	WDR70	chr5	37374318	37758435
WDR70_chr5_37374318_37758435	0/0	a0002	654	1	1	0	0	0	0	copy fasta	WDR70	chr5	37374318	37758435
WDR72_chr15_53508741_53764663	0/0	a0001	1102	99	24	15	46	3	11	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	a0002	1102	90	13	23	43	3	8	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/1	a0003	1102	71	5	18	34	6	7	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	a0004	1102	22	19	3	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	a0005	1102	6	6	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	a0006	1102	5	4	1	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	a0007	1102	5	0	3	2	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	a0008	1102	4	4	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	a0009	1102	4	4	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	1/0	a0010	1102	2	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	a0011	1102	2	0	2	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	a0012	1102	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	a0013	1102	1	0	0	1	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	a0014	1102	1	0	1	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	a0015	1102	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	a0016	1102	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	a0017	84	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR73_chr15_84634285_84659283	1/0	a0001	378	292	60	48	149	9	25	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	a0002	372	54	10	13	11	5	15	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	a0003	378	24	11	8	0	3	2	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/1	a0004	378	11	8	1	0	0	1	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	a0005	378	5	5	0	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	a0006	372	2	0	0	2	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	a0007	378	2	2	0	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	a0008	372	2	1	0	0	1	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	a0009	378	1	0	0	0	0	1	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	a0010	378	1	1	0	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR74_chr11_62827911_62844590	1/1	a0001	385	407	90	68	191	14	42	copy fasta	WDR74	chr11	62827911	62844590
WDR74_chr11_62827911_62844590	0/0	a0002	385	2	2	0	0	0	0	copy fasta	WDR74	chr11	62827911	62844590
WDR74_chr11_62827911_62844590	0/0	a0003	385	1	0	0	1	0	0	copy fasta	WDR74	chr11	62827911	62844590
WDR74_chr11_62827911_62844590	0/0	a0004	385	1	0	0	1	0	0	copy fasta	WDR74	chr11	62827911	62844590