JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WDR74_chr11_62827911_62844590	0/0	a0005	385	1	0	0	1	0	0	copy fasta	WDR74	chr11	62827911	62844590
WDR75_chr2_189436474_189480552	1/1	a0001	830	357	85	71	151	16	32	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	a0002	830	1	1	0	0	0	0	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	a0003	830	1	0	0	1	0	0	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	a0004	830	1	1	0	0	0	0	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	a0005	830	1	1	0	0	0	0	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	a0006	830	1	0	1	0	0	0	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	a0007	830	1	0	0	0	0	1	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	a0008	830	1	0	0	0	0	1	copy fasta	WDR75	chr2	189436474	189480552
WDR76_chr15_43822002_43873412	0/1	a0001	626	260	60	37	135	9	18	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	1/0	a0002	626	40	26	3	0	3	7	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	a0003	626	2	0	2	0	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	a0004	626	1	0	0	0	0	1	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	a0005	626	1	1	0	0	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	a0006	626	1	0	0	1	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	a0007	626	1	1	0	0	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR77_chr1_111434890_111454256	1/1	a0001	342	417	97	56	202	14	46	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	a0002	342	1	0	0	1	0	0	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	a0003	342	1	1	0	0	0	0	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	a0004	342	1	0	0	1	0	0	copy fasta	WDR77	chr1	111434890	111454256
WDR7_chr18_56646359_57034792	1/1	a0001	1490	140	74	14	34	2	14	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	a0002	1490	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	a0003	1490	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	a0004	1490	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	a0005	1490	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR81_chr17_1719704_1743585	0/0	a0001	1941	206	70	49	62	11	14	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/1	a0002	1941	99	1	11	75	1	10	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0003	1940	75	6	16	36	2	15	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0004	1941	11	7	0	3	0	1	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0005	1940	10	3	2	0	3	2	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0006	1941	6	0	0	6	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0007	1941	3	0	0	2	0	1	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0008	1941	2	2	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0009	1941	1	0	0	0	0	1	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0010	1940	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0011	1941	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0012	1941	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0013	1941	1	0	0	0	0	1	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0014	1941	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0015	1941	1	0	0	0	0	1	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0016	1941	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0017	1940	1	0	0	0	0	1	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0018	1941	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0019	1941	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0020	1941	1	0	0	0	0	1	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0021	1941	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0022	1941	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0023	1941	1	0	0	0	1	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0024	1941	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0025	1941	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585