JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WDR81_chr17_1719704_1743585	0/0	a0026	1940	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	a0027	1940	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR82_chr3_52249434_52283649	1/1	a0001	313	366	82	74	152	14	42	copy fasta	WDR82	chr3	52249434	52283649
WDR83OS_chr19_12663073_12674415	1/1	a0001	106	403	96	71	168	18	48	copy fasta	WDR83OS	chr19	12663073	12674415
WDR83OS_chr19_12663073_12674415	0/0	a0002	106	1	0	1	0	0	0	copy fasta	WDR83OS	chr19	12663073	12674415
WDR83_chr19_12661807_12680832	1/0	a0001	315	408	94	65	182	18	48	copy fasta	WDR83	chr19	12661807	12680832
WDR83_chr19_12661807_12680832	0/0	a0002	315	5	0	5	0	0	0	copy fasta	WDR83	chr19	12661807	12680832
WDR83_chr19_12661807_12680832	0/0	a0003	315	1	1	0	0	0	0	copy fasta	WDR83	chr19	12661807	12680832
WDR83_chr19_12661807_12680832	0/0	a0004	315	1	1	0	0	0	0	copy fasta	WDR83	chr19	12661807	12680832
WDR83_chr19_12661807_12680832	0/1	a0005	315	1	0	0	0	0	0	copy fasta	WDR83	chr19	12661807	12680832
WDR86_chr7_151376124_151415038	0/1	a0001	376	392	77	70	205	12	27	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	1/0	a0002	376	52	14	11	0	6	20	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	a0003	376	8	8	0	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	a0004	376	2	0	2	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	a0005	376	1	0	0	0	0	1	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	a0006	376	1	1	0	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	a0007	376	1	0	0	1	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	a0008	376	1	0	1	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR87_chr19_37879823_37911594	0/0	a0001	2912	102	19	10	64	1	8	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0002	2912	52	5	9	24	7	7	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/1	a0003	2912	36	4	12	8	5	6	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0004	2911	31	5	6	20	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	1/0	a0005	2912	25	2	10	9	1	2	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0006	2912	11	11	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0007	2912	9	0	0	8	0	1	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0008	2912	8	8	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0009	2912	5	0	5	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0010	2906	4	0	1	0	0	3	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0011	2911	3	2	1	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0012	2912	3	0	0	3	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0013	2911	3	3	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0014	2912	3	0	0	0	3	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0015	2906	2	2	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0016	2912	2	0	0	2	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0017	2912	2	0	2	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0018	2912	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0019	2911	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0020	2911	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0021	2911	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0022	2912	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0023	2912	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0024	2912	1	0	1	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0025	2912	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0026	2912	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0027	2912	1	0	0	0	1	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0028	2912	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0029	2912	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0030	2912	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0031	2912	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0032	2912	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594