JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WDR87_chr19_37879823_37911594	0/0	a0033	2912	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0034	2912	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0035	1495	1	0	0	0	0	1	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0036	2912	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0037	2912	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0038	2912	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0039	2912	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0040	2912	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0041	2912	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0042	2912	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0043	2912	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0044	2912	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0045	2912	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	a0046	2912	1	0	1	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR88_chr19_33127114_33180799	1/1	a0001	472	248	39	46	109	11	41	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	a0002	472	89	41	13	33	0	2	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	a0003	472	8	8	0	0	0	0	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	a0004	472	6	1	3	0	2	0	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	a0005	472	3	1	0	0	1	1	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	a0006	472	1	1	0	0	0	0	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	a0007	431	1	0	0	1	0	0	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	a0008	472	1	1	0	0	0	0	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	a0009	472	1	0	0	1	0	0	copy fasta	WDR88	chr19	33127114	33180799
WDR89_chr14_63592039_63646871	1/1	a0001	387	284	92	56	90	10	34	copy fasta	WDR89	chr14	63592039	63646871
WDR90_chr16_644365_672830	0/0	a0001	1748	122	6	21	74	4	17	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0002	1748	109	40	17	47	1	4	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	1/1	a0003	1748	52	3	16	8	7	16	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0004	1748	11	11	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0005	1748	10	7	1	1	0	1	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0006	1748	8	8	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0007	1748	3	0	0	3	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0008	1748	3	0	0	3	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0009	1748	3	1	2	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0010	1748	3	3	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0011	1748	3	2	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0012	1748	3	0	0	1	0	2	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0013	1748	2	0	0	0	0	2	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0014	1748	2	0	0	2	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0015	1748	2	0	0	2	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0016	1748	2	2	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0017	1748	2	0	2	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0018	1748	2	0	0	0	2	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0019	1748	2	2	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0020	1748	2	0	0	2	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0021	83	2	2	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0022	1748	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0023	1748	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0024	1748	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0025	1748	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0026	1748	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830