JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BTC_chr4_74739759_74799523	0/0	a0002	178	57	31	8	11	0	7	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/1	a0003	178	36	7	14	5	2	7	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	a0004	178	22	12	3	0	2	5	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	a0005	178	9	7	2	0	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	a0006	178	1	1	0	0	0	0	copy fasta	BTC	chr4	74739759	74799523
BTD_chr3_15596745_15658714	1/1	a0001	523	403	94	67	192	7	41	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	a0002	523	3	0	1	0	0	2	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	a0003	523	3	2	1	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	a0004	523	2	0	1	0	1	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	a0005	523	2	0	0	2	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	a0006	523	1	1	0	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	a0007	523	1	0	0	0	0	1	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	a0008	523	1	1	0	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTF3L4_chr1_52051295_52095716	1/1	a0001	158	276	92	48	94	10	30	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3_chr5_73493442_73510667	1/1	a0001	206	408	92	80	176	10	48	copy fasta	BTF3	chr5	73493442	73510667
BTG1_chr12_92135278_92150846	1/1	a0001	171	459	94	79	222	16	46	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	a0002	171	4	3	1	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	a0003	171	1	1	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG2_chr1_203300519_203314602	1/1	a0001	158	426	98	68	196	17	45	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	a0002	158	7	0	2	5	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	a0003	158	1	0	0	0	0	1	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	a0004	158	1	0	0	1	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	a0005	158	1	0	0	0	1	0	copy fasta	BTG2	chr1	203300519	203314602
BTG3_chr21_17588653_17617901	1/1	a0001	252	400	98	65	181	16	38	copy fasta	BTG3	chr21	17588653	17617901
BTG3_chr21_17588653_17617901	0/0	a0002	252	1	0	1	0	0	0	copy fasta	BTG3	chr21	17588653	17617901
BTG3_chr21_17588653_17617901	0/0	a0003	252	1	0	0	1	0	0	copy fasta	BTG3	chr21	17588653	17617901
BTG4_chr11_111489815_111517386	1/1	a0001	229	350	95	67	144	10	32	copy fasta	BTG4	chr11	111489815	111517386
BTG4_chr11_111489815_111517386	0/0	a0002	228	2	0	0	2	0	0	copy fasta	BTG4	chr11	111489815	111517386
BTG4_chr11_111489815_111517386	0/0	a0003	229	1	1	0	0	0	0	copy fasta	BTG4	chr11	111489815	111517386
BTG4_chr11_111489815_111517386	0/0	a0004	229	1	0	1	0	0	0	copy fasta	BTG4	chr11	111489815	111517386
BTK_chrX_101344450_101391191	1/1	a0001	659	302	76	54	129	9	32	copy fasta	BTK	chrX	101344450	101391191
BTK_chrX_101344450_101391191	0/0	a0002	639	1	0	1	0	0	0	copy fasta	BTK	chrX	101344450	101391191
BTLA_chr3_112458966_112504472	0/1	a0001	289	187	16	45	96	6	23	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	a0002	289	125	64	11	39	0	11	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	a0003	289	18	3	4	11	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	1/0	a0004	289	13	10	0	2	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	a0005	289	1	1	0	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTN1A1_chr6_26495303_26515425	0/0	a0001	526	225	54	35	98	7	31	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	1/1	a0002	526	156	32	36	60	8	18	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	a0003	526	16	3	5	7	1	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	a0004	526	10	1	4	5	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	a0005	526	3	3	0	0	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	a0006	526	1	1	0	0	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	a0007	526	1	1	0	0	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	a0008	526	1	1	0	0	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	a0009	526	1	0	0	0	0	1	copy fasta	BTN1A1	chr6	26495303	26515425
BTN2A1_chr6_26452955_26474637	1/1	a0001	527	375	83	66	173	15	36	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	a0002	527	19	0	0	19	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	a0003	527	8	2	5	0	1	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	a0004	527	8	0	0	8	0	0	copy fasta	BTN2A1	chr6	26452955	26474637