JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WDR90_chr16_644365_672830	0/0	a0027	1748	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0028	1748	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0029	1748	1	0	0	0	0	1	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0030	1748	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0031	1748	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0032	1748	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0033	1748	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0034	1748	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0035	1748	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0036	1748	1	0	0	0	0	1	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0037	1748	1	0	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0038	1748	1	0	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0039	1748	1	0	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0040	1748	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0041	1748	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0042	1748	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0043	1748	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0044	1748	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0045	1748	1	0	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0046	1748	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0047	1748	1	0	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0048	1748	1	0	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	a0049	1748	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR91_chr7_135178839_135216526	0/0	a0001	747	231	43	58	86	7	37	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	1/1	a0002	747	159	48	15	81	3	10	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	a0003	747	1	0	0	1	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	a0004	747	1	0	0	0	0	1	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	a0005	747	1	0	0	1	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	a0006	747	1	0	0	1	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	a0007	747	1	1	0	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	a0008	747	1	0	1	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR93_chr15_89685811_89748638	1/0	a0001	686	196	40	45	73	8	29	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/1	a0002	686	97	20	15	44	6	11	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	a0003	686	16	7	5	3	0	1	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	a0004	686	8	1	0	7	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	a0005	686	5	3	2	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	a0006	686	4	3	0	0	1	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	a0007	686	4	4	0	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	a0008	686	4	0	4	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	a0009	686	3	0	2	0	0	1	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	a0010	686	3	3	0	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	a0011	686	2	2	0	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	a0012	686	2	2	0	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	a0013	686	2	0	0	2	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	a0014	686	2	2	0	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	a0015	686	1	0	0	0	1	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	a0016	686	1	0	1	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	a0017	686	1	1	0	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	a0018	686	1	0	0	1	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR97_chr8_144102739_144123328	0/1	a0001	1622	226	28	58	97	9	33	copy fasta	WDR97	chr8	144102739	144123328