JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WDR97_chr8_144102739_144123328	0/0	a0002	1622	17	17	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0003	1622	12	0	6	0	4	2	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0004	1622	12	10	0	0	1	1	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0005	971	10	0	0	10	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	1/0	a0006	1622	9	8	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0007	1622	6	6	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0008	1622	5	5	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0009	1622	3	0	2	0	1	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0010	1622	3	2	1	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0011	1622	3	0	3	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0012	1622	3	2	1	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0013	1622	3	3	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0014	1622	3	3	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0015	1622	2	0	0	2	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0016	1622	2	2	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0017	1622	2	2	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0018	1622	2	0	0	2	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0019	1622	2	0	2	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0020	1622	2	0	0	0	0	2	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0021	1622	2	0	2	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0022	1622	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0023	1622	1	0	1	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0024	1622	1	0	0	0	1	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0025	1628	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0026	1622	1	0	0	1	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0027	1622	1	0	0	1	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0028	838	1	0	0	1	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0029	1622	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0030	1622	1	0	0	0	0	1	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0031	1622	1	0	0	0	0	1	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0032	1629	1	0	0	1	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0033	1622	1	0	0	1	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0034	1622	1	0	0	1	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0035	1622	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0036	1622	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0037	1622	1	0	0	1	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0038	1622	1	0	1	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0039	1622	1	0	1	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	a0040	1622	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDSUB1_chr2_159230798_159291703	1/1	a0001	476	166	15	30	87	6	26	copy fasta	WDSUB1	chr2	159230798	159291703
WDSUB1_chr2_159230798_159291703	0/0	a0002	476	41	6	20	6	5	4	copy fasta	WDSUB1	chr2	159230798	159291703
WDSUB1_chr2_159230798_159291703	0/0	a0003	476	30	27	0	0	1	2	copy fasta	WDSUB1	chr2	159230798	159291703
WDSUB1_chr2_159230798_159291703	0/0	a0004	476	8	8	0	0	0	0	copy fasta	WDSUB1	chr2	159230798	159291703
WDSUB1_chr2_159230798_159291703	0/0	a0005	476	7	0	0	7	0	0	copy fasta	WDSUB1	chr2	159230798	159291703
WDTC1_chr1_27229632_27313636	1/1	a0001	677	213	76	40	58	12	25	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	a0002	677	1	0	0	0	0	1	copy fasta	WDTC1	chr1	27229632	27313636
WEE1_chr11_9568670_9594985	1/1	a0001	646	432	90	82	206	13	39	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	a0002	646	2	0	0	0	1	1	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	a0003	646	2	0	0	2	0	0	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	a0004	646	2	2	0	0	0	0	copy fasta	WEE1	chr11	9568670	9594985