JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WEE1_chr11_9568670_9594985	0/0	a0005	646	1	0	0	1	0	0	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	a0006	646	1	0	0	1	0	0	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	a0007	646	1	0	0	0	0	1	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	a0008	646	1	0	0	0	0	1	copy fasta	WEE1	chr11	9568670	9594985
WEE2_chr7_141703353_141736271	0/1	a0001	567	366	80	62	169	14	40	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	a0002	567	13	0	4	9	0	0	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	a0003	567	11	11	0	0	0	0	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	a0004	567	1	0	0	0	0	1	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	a0005	567	1	0	0	0	0	1	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	a0006	567	1	1	0	0	0	0	copy fasta	WEE2	chr7	141703353	141736271
WFDC10A_chr20_45624739_45636196	1/1	a0001	79	404	85	74	189	14	40	copy fasta	WFDC10A	chr20	45624739	45636196
WFDC10A_chr20_45624739_45636196	0/0	a0002	79	4	4	0	0	0	0	copy fasta	WFDC10A	chr20	45624739	45636196
WFDC10A_chr20_45624739_45636196	0/0	a0003	79	1	1	0	0	0	0	copy fasta	WFDC10A	chr20	45624739	45636196
WFDC10A_chr20_45624739_45636196	0/0	a0004	79	1	0	0	1	0	0	copy fasta	WFDC10A	chr20	45624739	45636196
WFDC10B_chr20_45679651_45710019	0/0	a0001	73	405	90	55	213	9	38	copy fasta	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	1/1	a0002	73	34	2	17	0	5	8	copy fasta	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	a0003	73	1	0	0	1	0	0	copy fasta	WFDC10B	chr20	45679651	45710019
WFDC11_chr20_45643563_45675239	1/1	a0001	87	418	94	80	190	14	38	copy fasta	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	a0002	83	1	0	0	0	0	1	copy fasta	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	a0003	87	1	0	0	0	0	1	copy fasta	WFDC11	chr20	45643563	45675239
WFDC12_chr20_45118425_45129465	1/1	a0001	111	418	93	74	193	14	42	copy fasta	WFDC12	chr20	45118425	45129465
WFDC12_chr20_45118425_45129465	0/0	a0002	111	1	0	0	1	0	0	copy fasta	WFDC12	chr20	45118425	45129465
WFDC12_chr20_45118425_45129465	0/0	a0003	111	1	1	0	0	0	0	copy fasta	WFDC12	chr20	45118425	45129465
WFDC13_chr20_45697038_45713817	1/1	a0001	93	446	94	69	223	16	42	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	a0002	93	3	0	3	0	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	a0003	93	1	0	1	0	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	a0004	93	1	0	1	0	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	a0005	93	1	0	0	1	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC1_chr16_84289878_84334844	1/1	a0001	220	332	55	59	166	14	36	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	a0002	220	117	24	20	55	4	14	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	a0003	220	6	5	1	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	a0004	192	3	2	0	1	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	a0005	220	3	3	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	a0006	220	2	2	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	a0007	220	2	2	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	a0008	220	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	a0009	220	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	a0010	220	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	a0011	220	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	a0012	220	1	0	0	1	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	a0013	220	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	a0014	220	1	0	0	1	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC2_chr20_45464753_45486532	1/1	a0001	124	415	92	70	203	10	38	copy fasta	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	a0002	142	1	0	0	1	0	0	copy fasta	WFDC2	chr20	45464753	45486532
WFDC3_chr20_45769213_45796883	0/1	a0001	231	273	56	54	123	14	25	copy fasta	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	1/0	a0002	231	116	30	12	56	4	13	copy fasta	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	a0003	231	8	1	5	0	0	2	copy fasta	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	a0004	231	5	4	1	0	0	0	copy fasta	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	a0005	231	4	4	0	0	0	0	copy fasta	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	a0006	231	3	3	0	0	0	0	copy fasta	WFDC3	chr20	45769213	45796883