JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WFDC3_chr20_45769213_45796883	0/0	a0007	231	1	0	0	1	0	0	copy fasta	WFDC3	chr20	45769213	45796883
WFDC5_chr20_45104463_45120174	1/1	a0001	123	395	94	67	176	12	44	copy fasta	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	a0002	123	25	2	7	10	2	4	copy fasta	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	a0003	123	8	0	0	8	0	0	copy fasta	WFDC5	chr20	45104463	45120174
WFDC6_chr20_45529196_45544482	1/1	a0001	86	444	94	84	206	14	44	copy fasta	WFDC6	chr20	45529196	45544482
WFDC8_chr20_45546762_45584284	1/0	a0001	241	268	46	42	140	6	33	copy fasta	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/1	a0002	241	88	28	28	20	5	6	copy fasta	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	a0003	241	47	13	2	29	3	0	copy fasta	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	a0004	241	3	3	0	0	0	0	copy fasta	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	a0005	241	1	0	0	1	0	0	copy fasta	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	a0006	241	1	0	0	0	0	1	copy fasta	WFDC8	chr20	45546762	45584284
WFDC9_chr20_45602939_45636284	1/1	a0001	89	247	59	49	106	6	25	copy fasta	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	a0002	89	150	31	22	76	4	17	copy fasta	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	a0003	89	1	0	1	0	0	0	copy fasta	WFDC9	chr20	45602939	45636284
WFIKKN1_chr16_625985_639117	1/1	a0001	548	389	90	77	157	14	49	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	a0002	548	2	0	2	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	a0003	548	2	0	0	2	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	a0004	548	2	2	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	a0005	548	1	1	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	a0006	548	1	1	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	a0007	548	1	1	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	a0008	548	1	0	1	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	a0009	548	1	0	0	1	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	a0010	548	1	1	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	a0011	548	1	0	0	1	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	a0012	548	1	0	0	0	0	1	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	a0013	548	1	0	0	1	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN2_chr17_50830586_50847353	1/1	a0001	576	382	84	70	181	18	27	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	a0002	576	26	10	1	3	0	12	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	a0003	576	3	0	3	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	a0004	576	1	1	0	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	a0005	576	1	0	1	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	a0006	576	1	0	0	1	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	a0007	576	1	0	0	0	0	1	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	a0008	576	1	0	1	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	a0009	576	1	1	0	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	a0010	576	1	0	0	1	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFS1_chr4_6264850_6308265	0/1	a0001	890	162	3	32	93	10	23	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0002	890	104	75	13	11	1	4	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	1/0	a0003	890	32	1	17	1	4	8	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0004	890	24	6	8	5	1	4	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0005	890	13	0	1	12	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0006	890	11	0	0	10	0	1	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0007	890	7	0	0	7	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0008	890	5	0	0	0	0	5	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0009	890	3	3	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0010	890	3	0	0	3	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0011	890	3	3	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0012	890	2	0	0	2	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0013	890	2	0	0	2	0	0	copy fasta	WFS1	chr4	6264850	6308265