JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WFS1_chr4_6264850_6308265	0/0	a0014	890	2	0	0	2	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0015	890	2	2	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0016	890	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0017	890	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0018	890	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0019	890	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0020	890	1	0	0	0	0	1	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0021	890	1	0	0	1	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0022	890	1	0	0	1	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0023	890	1	0	0	1	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0024	890	1	0	0	1	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0025	890	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0026	890	1	0	1	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0027	890	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0028	890	1	0	0	1	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0029	890	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	a0030	890	1	0	0	1	0	0	copy fasta	WFS1	chr4	6264850	6308265
WHAMM_chr15_82804628_82841108	1/1	a0001	809	243	69	45	101	7	19	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	a0002	809	75	9	16	38	5	7	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	a0003	809	53	3	6	35	1	8	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	a0004	809	24	5	12	0	5	2	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	a0005	809	15	1	0	14	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	a0006	682	9	3	2	4	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	a0007	809	3	3	0	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	a0008	806	3	3	0	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	a0009	809	2	0	0	2	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	a0010	682	2	0	0	2	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	a0011	809	1	0	0	1	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	a0012	809	1	0	1	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	a0013	809	1	0	0	1	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHRN_chr9_114397080_114510473	1/0	a0001	907	112	30	25	36	7	13	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/1	a0002	907	77	4	15	50	0	7	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0003	907	61	15	15	23	3	5	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0004	907	23	17	3	1	0	2	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0005	907	10	0	6	1	3	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0006	907	7	0	0	6	0	1	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0007	907	6	0	0	6	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0008	907	6	5	1	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0009	907	5	0	5	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0010	907	2	1	0	0	1	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0011	907	2	0	0	1	0	1	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0012	907	2	2	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0013	907	2	2	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0014	907	2	0	0	2	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0015	907	2	1	1	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0016	907	2	2	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0017	907	1	0	0	1	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0018	907	1	0	0	1	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0019	907	1	0	1	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0020	907	1	1	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473