JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WHRN_chr9_114397080_114510473	0/0	a0021	907	1	1	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0022	907	1	0	0	0	0	1	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0023	907	1	0	0	1	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0024	907	1	1	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	a0025	907	1	0	0	1	0	0	copy fasta	WHRN	chr9	114397080	114510473
WIF1_chr12_65045626_65126305	1/1	a0001	379	375	85	70	161	14	43	copy fasta	WIF1	chr12	65045626	65126305
WIF1_chr12_65045626_65126305	0/0	a0002	379	1	0	0	0	0	1	copy fasta	WIF1	chr12	65045626	65126305
WIF1_chr12_65045626_65126305	0/0	a0003	379	1	0	0	1	0	0	copy fasta	WIF1	chr12	65045626	65126305
WIF1_chr12_65045626_65126305	0/0	a0004	379	1	1	0	0	0	0	copy fasta	WIF1	chr12	65045626	65126305
WIPF1_chr2_174554574_174602804	0/1	a0001	503	268	75	53	93	12	34	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	1/0	a0002	503	32	19	5	1	0	6	copy fasta	WIPF1	chr2	174554574	174602804
WIPF2_chr17_40214304_40289136	1/1	a0001	440	307	78	52	137	10	28	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	a0002	440	2	2	0	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	a0003	440	2	2	0	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	a0004	440	1	0	0	0	1	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	a0005	440	1	0	0	0	1	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	a0006	440	1	0	0	1	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF3_chr7_29801508_29922061	1/1	a0001	483	220	73	43	69	8	25	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	a0002	483	30	0	0	27	0	3	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	a0003	483	6	6	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	a0004	483	4	0	4	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	a0005	483	3	3	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	a0006	478	2	2	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	a0007	483	2	0	2	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	a0008	483	2	2	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	a0009	483	1	0	1	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	a0010	483	1	1	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	a0011	483	1	1	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	a0012	483	1	0	0	1	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	a0013	483	1	0	1	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	a0014	483	1	0	0	1	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	a0015	483	1	0	1	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPI1_chr17_68416281_68462496	0/1	a0001	446	284	73	53	113	11	33	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	1/0	a0002	446	130	16	21	74	7	11	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	a0003	446	2	2	0	0	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	a0004	446	1	1	0	0	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	a0005	446	1	1	0	0	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	a0006	446	1	1	0	0	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	a0007	446	1	0	0	1	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI2_chr7_5185233_5238840	1/1	a0001	454	390	90	76	168	12	42	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	a0002	454	1	1	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	a0003	454	1	1	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIZ_chr19_15414978_15454956	1/1	a0001	1889	189	69	47	39	5	27	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	a0002	1889	6	6	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	a0003	1889	3	3	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	a0004	1889	2	0	1	0	1	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	a0005	1889	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	a0006	1889	1	0	1	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	a0007	1889	1	0	0	0	0	1	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	a0008	1889	1	0	1	0	0	0	copy fasta	WIZ	chr19	15414978	15454956