JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WIZ_chr19_15414978_15454956	0/0	a0009	1889	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	a0010	1889	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	a0011	1889	1	0	0	1	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	a0012	1889	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WLS_chr1_68120360_68237523	1/0	a0001	541	269	73	47	120	6	22	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/1	a0002	541	61	7	19	21	2	11	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	a0003	541	1	1	0	0	0	0	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	a0004	541	1	1	0	0	0	0	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	a0005	541	1	0	0	0	0	1	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	a0006	541	1	0	0	1	0	0	copy fasta	WLS	chr1	68120360	68237523
WNK1_chr12_747579_916452	0/1	a0001	2382	96	27	31	26	5	6	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0002	2382	89	38	14	20	2	15	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0003	2382	22	0	5	13	3	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0004	2382	22	0	4	10	2	6	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0005	2382	16	1	5	10	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0006	2382	8	6	2	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	1/0	a0007	2382	7	6	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0008	2382	4	0	1	2	0	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0009	2382	3	0	0	3	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0010	2382	2	2	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0011	2382	2	0	2	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0012	2382	1	0	0	1	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0013	2382	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0014	2382	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0015	2382	1	0	0	1	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0016	2382	1	0	0	1	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0017	2382	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0018	2382	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0019	2382	1	0	0	1	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0020	2382	1	0	0	0	0	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0021	2382	1	0	0	0	0	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0022	2382	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0023	2382	1	0	0	0	0	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	a0024	2382	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK2_chr9_93179139_93325569	1/1	a0001	2217	180	44	35	62	9	28	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0002	2217	67	9	19	25	7	7	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0003	2217	15	0	5	10	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0004	2217	13	4	1	8	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0005	2205	11	10	1	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0006	2217	4	0	0	4	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0007	2217	3	2	1	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0008	2217	3	1	1	0	0	1	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0009	2223	2	2	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0010	2217	1	0	0	0	0	1	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0011	2217	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0012	2217	1	0	0	1	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0013	2217	1	0	0	1	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0014	2217	1	0	1	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0015	2217	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0016	2205	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569