JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WNK2_chr9_93179139_93325569	0/0	a0017	2205	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0018	2217	1	0	0	0	0	1	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0019	2217	1	0	1	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0020	2217	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0021	2217	1	0	0	1	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0022	2217	1	0	0	1	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0023	2217	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0024	2217	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0025	2217	1	0	0	1	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0026	2199	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	a0027	2217	1	0	1	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK3_chrX_54187823_54363046	1/1	a0001	1800	146	35	23	63	5	18	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	a0002	1800	6	6	0	0	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	a0003	536	1	0	0	1	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	a0004	1800	1	0	0	1	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	a0005	1800	1	1	0	0	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	a0006	1800	1	0	0	1	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK4_chr17_42775610_42802066	1/1	a0001	1243	218	54	49	83	6	24	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0002	1243	13	3	0	6	0	4	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0003	1243	9	8	1	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0004	1243	6	6	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0005	1243	5	5	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0006	1243	4	4	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0007	1243	3	3	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0008	1243	1	0	0	1	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0009	1243	1	0	0	1	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0010	1243	1	0	0	0	1	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0011	1243	1	0	1	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0012	1243	1	0	0	0	1	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0013	1243	1	1	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0014	1243	1	0	0	1	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0015	1243	1	0	0	0	0	1	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0016	1243	1	1	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0017	1243	1	0	0	1	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0018	1243	1	0	0	0	0	1	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0019	1243	1	0	0	0	0	1	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0020	1243	1	0	0	1	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0021	1243	1	0	0	0	0	1	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0022	1243	1	0	1	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	a0023	1243	1	1	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNT10A_chr2_218875852_218898928	1/1	a0001	417	324	83	49	148	6	36	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	a0002	417	4	4	0	0	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	a0003	417	4	0	4	0	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	a0004	417	2	0	0	2	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	a0005	417	1	0	1	0	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	a0006	417	1	0	0	1	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	a0007	417	1	1	0	0	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	a0008	417	1	0	0	0	0	1	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	a0009	417	1	0	0	0	0	1	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	a0010	417	1	0	0	1	0	0	copy fasta	WNT10A	chr2	218875852	218898928