JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WNT8A_chr5_138079033_138096541	0/0	a0004	369	1	0	1	0	0	0	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	a0005	369	1	0	0	1	0	0	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	a0006	369	1	1	0	0	0	0	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	a0007	369	1	0	0	1	0	0	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	a0008	369	1	0	1	0	0	0	copy fasta	WNT8A	chr5	138079033	138096541
WNT8B_chr10_100458009_100488744	1/0	a0001	351	254	64	49	100	11	29	copy fasta	WNT8B	chr10	100458009	100488744
WNT8B_chr10_100458009_100488744	0/1	a0002	351	79	19	11	36	5	7	copy fasta	WNT8B	chr10	100458009	100488744
WNT8B_chr10_100458009_100488744	0/0	a0003	351	1	1	0	0	0	0	copy fasta	WNT8B	chr10	100458009	100488744
WNT9A_chr1_227913656_227952932	1/1	a0001	365	400	92	69	179	18	40	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	a0002	365	2	1	0	0	0	1	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	a0003	365	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	a0004	365	1	0	0	0	0	1	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	a0005	365	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	a0006	365	1	0	1	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9B_chr17_46846583_46885560	0/1	a0001	357	246	76	47	88	8	26	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	a0002	357	127	6	29	72	5	15	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	a0003	357	4	4	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	a0004	357	2	2	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	a0005	357	2	0	0	2	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	a0006	357	1	1	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	a0007	357	1	0	0	0	0	1	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	a0008	357	1	1	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	a0009	357	1	0	0	1	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	a0010	357	1	0	0	1	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	a0011	357	1	0	0	0	1	0	copy fasta	WNT9B	chr17	46846583	46885560
WRAP53_chr17_7683477_7708502	1/1	a0001	548	185	8	45	101	10	19	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	a0002	548	135	59	16	43	2	15	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	a0003	548	35	3	6	17	2	7	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	a0004	548	13	13	0	0	0	0	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	a0005	548	6	0	0	6	0	0	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	a0006	548	5	4	1	0	0	0	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	a0007	548	2	0	0	0	0	2	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	a0008	548	1	0	0	0	0	1	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	a0009	548	1	1	0	0	0	0	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	a0010	548	1	0	0	1	0	0	copy fasta	WRAP53	chr17	7683477	7708502
WRAP73_chr1_3625770_3655103	1/1	a0001	460	338	78	58	145	17	38	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	a0002	460	23	4	14	0	1	4	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	a0003	460	10	9	1	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	a0004	460	5	5	0	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	a0005	460	2	0	2	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	a0006	460	1	0	0	1	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	a0007	460	1	0	1	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	a0008	460	1	1	0	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	a0009	460	1	1	0	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRNIP1_chr6_2760393_2791952	1/1	a0001	665	432	90	80	208	16	36	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	a0002	661	5	0	5	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	a0003	665	2	2	0	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	a0004	665	1	0	1	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	a0005	665	1	1	0	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	a0006	665	1	0	0	1	0	0	copy fasta	WRNIP1	chr6	2760393	2791952