JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BTN2A1_chr6_26452955_26474637	0/0	a0005	528	5	5	0	0	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	a0006	527	2	0	2	0	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	a0007	527	1	1	0	0	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	a0008	527	1	0	1	0	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	a0009	527	1	1	0	0	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A2_chr6_26378108_26399874	1/1	a0001	523	362	76	70	160	11	43	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	a0002	523	7	7	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	a0003	523	4	1	2	0	0	1	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	a0004	523	3	3	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	a0005	523	2	2	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	a0006	523	2	0	1	0	1	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	a0007	523	1	1	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	a0008	523	1	1	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	a0009	523	1	1	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	a0010	523	1	0	0	0	0	1	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	a0011	523	1	0	0	1	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	a0012	523	1	0	0	1	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	a0013	523	1	0	1	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	a0014	523	1	0	1	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	a0015	523	1	0	1	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	a0016	523	1	0	0	0	0	1	copy fasta	BTN2A2	chr6	26378108	26399874
BTN3A1_chr6_26397275_26420208	1/1	a0001	513	323	74	48	157	10	32	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	a0002	513	40	9	17	2	1	11	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	a0003	513	8	3	2	0	0	3	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	a0004	513	6	0	5	0	1	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	a0005	513	6	2	3	1	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	a0006	513	3	3	0	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	a0007	513	3	0	3	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	a0008	513	2	0	0	2	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	a0009	513	1	0	0	1	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	a0010	513	1	1	0	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	a0011	513	1	0	0	1	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A2_chr6_26360198_26383312	1/1	a0001	334	267	66	55	104	12	28	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	a0002	334	46	16	14	2	1	13	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	a0003	334	31	3	3	25	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	a0004	334	18	0	0	14	0	4	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	a0005	334	17	2	4	8	1	2	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	a0006	334	1	1	0	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	a0007	124	1	0	0	0	0	1	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	a0008	334	1	0	0	1	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A3_chr6_26435504_26458415	1/1	a0001	584	398	92	67	179	14	44	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	a0002	584	4	4	0	0	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	a0003	170	2	0	2	0	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	a0004	584	2	0	0	2	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	a0005	584	1	0	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	a0006	584	1	0	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	a0007	584	1	0	1	0	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	a0008	584	1	0	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTNL2_chr6_32388339_32412181	0/1	a0001	482	213	55	38	85	11	23	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	a0002	482	77	16	26	20	4	11	copy fasta	BTNL2	chr6	32388339	32412181