JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WTAP_chr6_159722506_159761319	0/0	a0003	396	1	0	0	1	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTIP_chr19_34476758_34517304	1/1	a0001	430	382	88	67	174	14	37	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	a0002	430	11	2	3	2	0	4	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	a0003	468	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	a0004	430	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	a0005	430	1	0	0	0	0	1	copy fasta	WTIP	chr19	34476758	34517304
WWC1_chr5_168286645_168477303	1/0	a0001	1113	117	26	34	36	5	15	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	a0002	1112	77	26	18	25	2	6	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	a0003	1112	29	22	2	5	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/1	a0004	1113	12	3	2	3	2	1	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	a0005	1113	6	0	0	6	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	a0006	1112	3	1	2	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	a0007	1112	2	2	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	a0008	1113	2	2	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	a0009	1112	2	2	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	a0010	1113	1	0	1	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	a0011	1112	1	0	1	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	a0012	1112	1	0	0	1	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	a0013	1113	1	0	0	0	1	0	copy fasta	WWC1	chr5	168286645	168477303
WWC2_chr4_183094257_183325777	1/1	a0001	1192	143	44	19	53	6	19	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	a0002	1192	41	12	8	18	1	2	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	a0003	1192	30	3	4	17	2	4	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	a0004	1192	7	1	3	0	0	3	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	a0005	1192	6	0	3	0	1	2	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	a0006	1192	5	1	0	4	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	a0007	1192	4	4	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	a0008	1192	3	2	1	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	a0009	1192	1	1	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	a0010	1192	1	1	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	a0011	1192	1	1	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWOX_chr16_78094654_79217667	0/0	a0001	414	79	21	11	31	1	15	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	a0002	414	20	4	8	2	1	5	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	a0003	414	7	5	2	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	a0004	414	6	5	1	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	a0005	414	6	6	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	a0006	414	6	6	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	a0007	414	3	3	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	a0008	414	3	3	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	a0009	414	2	0	2	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	a0010	414	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	a0011	414	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	a0012	414	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	a0013	414	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	a0014	414	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	a0015	414	1	0	1	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	a0016	414	1	0	0	0	0	1	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	a0017	414	1	0	0	0	0	1	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	a0018	414	1	0	0	1	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	a0019	414	1	0	1	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWP1_chr8_86337547_86473503	1/1	a0001	922	297	82	52	120	8	33	copy fasta	WWP1	chr8	86337547	86473503