JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
XBP1_chr22_28789560_28805569	1/0	a0001	376	343	85	50	164	11	32	copy fasta	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/1	a0002	376	63	0	4	42	5	11	copy fasta	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	a0003	338	1	0	0	0	0	1	copy fasta	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	a0004	376	1	1	0	0	0	0	copy fasta	XBP1	chr22	28789560	28805569
XCL1_chr1_168571605_168587069	1/1	a0001	114	435	79	77	215	12	50	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	a0002	114	16	16	0	0	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	a0003	114	3	0	0	3	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	a0004	114	2	1	1	0	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL2_chr1_168535768_168548997	1/1	a0001	114	281	91	49	97	9	33	copy fasta	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	a0002	114	161	5	27	113	3	13	copy fasta	XCL2	chr1	168535768	168548997
XCR1_chr3_46012007_46032483	1/1	a0001	333	397	95	62	181	16	41	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	a0002	333	1	0	0	1	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	a0003	333	1	0	0	0	0	1	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	a0004	333	1	1	0	0	0	0	copy fasta	XCR1	chr3	46012007	46032483
XDH_chr2_31329321_31419742	1/0	a0001	1333	282	59	55	125	13	29	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/1	a0002	1333	30	2	6	17	0	4	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0003	1333	14	13	1	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0004	1333	11	10	1	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0005	1333	7	0	0	7	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0006	1333	4	1	1	0	0	2	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0007	1333	3	3	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0008	1333	3	3	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0009	1333	2	1	1	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0010	1333	2	0	0	0	1	1	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0011	1333	1	1	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0012	1333	1	0	0	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0013	1333	1	1	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0014	1333	1	0	1	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0015	1333	1	1	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0016	1333	1	1	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0017	1333	1	0	0	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0018	1333	1	0	0	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0019	1333	1	1	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0020	1333	1	0	0	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0021	1333	1	1	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	a0022	1333	1	0	0	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XG_chrX_2747040_2821500	0/0	a0001	195	300	71	49	142	9	29	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	1/0	a0002	195	13	7	4	1	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/1	a0003	195	7	0	2	0	4	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	a0004	195	1	1	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	a0005	129	1	0	0	1	0	0	copy fasta	XG	chrX	2747040	2821500
XIAP_chrX_123855053_123918972	1/1	a0001	497	204	39	39	98	4	22	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	a0002	497	78	41	20	8	5	4	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	a0003	497	2	0	0	2	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	a0004	496	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	a0005	497	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIRP1_chr3_39178215_39197595	0/1	a0001	1843	212	33	43	107	6	22	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0002	1843	39	1	10	16	3	9	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0003	1843	26	7	8	11	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0004	1843	23	0	2	19	1	1	copy fasta	XIRP1	chr3	39178215	39197595