JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
XIRP1_chr3_39178215_39197595	0/0	a0005	1843	21	8	2	2	1	8	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0006	1843	15	13	2	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0007	1843	11	9	1	0	0	1	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0008	1843	5	5	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0009	1843	5	5	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0010	1843	5	0	5	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0011	1843	4	0	2	0	2	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0012	1843	3	0	0	3	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	1/0	a0013	1843	3	1	1	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0014	1843	2	0	2	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0015	1843	2	0	0	0	2	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0016	1843	2	2	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0017	1843	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0018	1843	1	0	1	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0019	1843	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0020	1843	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0021	1843	1	0	0	1	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0022	1843	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0023	1843	1	0	0	1	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0024	1843	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0025	1843	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0026	1843	1	0	0	0	0	1	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0027	1843	1	0	0	1	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0028	1843	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0029	1843	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0030	1843	1	0	1	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0031	1843	1	0	0	1	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0032	1843	1	0	0	1	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0033	1843	1	0	0	0	0	1	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0034	1843	1	0	0	0	0	1	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0035	1843	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0036	1843	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0037	1843	1	0	0	1	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0038	1843	1	0	0	0	1	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0039	1843	1	0	0	1	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	a0040	1843	1	0	0	1	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP2_chr2_166883480_167264753	0/0	a0001	3549	89	32	7	36	2	12	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0002	3549	27	13	3	6	0	5	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0003	3549	10	0	0	10	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0004	3549	7	0	0	7	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0005	3549	6	0	1	4	0	1	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0006	3549	6	0	0	6	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0007	3549	5	4	1	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0008	3549	4	0	0	4	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0009	3549	3	3	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0010	3549	3	3	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0011	3549	3	3	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0012	3549	3	0	0	3	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0013	3549	3	0	0	0	0	3	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0014	3549	2	1	0	0	0	1	copy fasta	XIRP2	chr2	166883480	167264753