JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
XIRP2_chr2_166883480_167264753	0/0	a0015	3549	2	0	0	2	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0016	77	1	0	0	1	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0017	3549	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0018	3549	1	0	0	0	0	1	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0019	3549	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0020	3549	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0021	3549	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0022	3549	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0023	3549	1	0	0	0	0	1	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0024	3549	1	0	0	1	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0025	3549	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0026	3549	1	0	0	1	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0027	3549	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0028	3549	1	0	0	1	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0029	3549	1	0	0	1	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0030	3549	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0031	3549	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	a0032	3546	1	0	0	1	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XKR3_chr22_16778480_16830411	0/0	a0001	459	173	34	30	94	0	15	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	a0002	459	130	33	13	67	4	13	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	a0003	459	46	2	19	20	3	2	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	a0004	459	29	8	5	9	0	7	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	a0005	459	19	7	0	9	0	3	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	a0006	459	10	3	1	5	1	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	a0007	459	3	0	0	3	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	a0008	459	1	1	0	0	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	a0009	459	1	0	0	1	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	a0010	459	1	0	0	1	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	a0011	459	1	1	0	0	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	a0012	459	1	1	0	0	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	a0013	459	1	0	0	1	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	a0014	459	1	0	0	1	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	a0015	459	1	0	0	1	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR4_chr8_55097028_55547054	0/0	a0001	650	179	74	33	52	8	12	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	a0002	650	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	a0003	650	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	a0004	650	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR5_chr8_6803517_6840524	0/0	a0001	686	268	82	39	109	12	26	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	1/1	a0002	686	184	8	33	117	4	20	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	a0003	686	4	4	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	a0004	686	2	0	0	2	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	a0005	686	1	1	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	a0006	686	1	0	1	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	a0007	686	1	0	0	1	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	a0008	686	1	1	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	a0009	686	1	0	1	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	a0010	686	1	1	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	a0011	686	1	0	0	1	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	a0012	686	1	1	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	a0013	686	1	0	0	0	1	0	copy fasta	XKR5	chr8	6803517	6840524