JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
XKR5_chr8_6803517_6840524	0/0	a0014	686	1	0	1	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	a0015	686	1	0	0	0	1	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	a0016	686	1	0	1	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR6_chr8_10891045_11206833	0/0	a0001	641	178	90	42	8	10	28	copy fasta	XKR6	chr8	10891045	11206833
XKR7_chr20_31963151_32008387	1/1	a0001	579	266	71	65	83	11	34	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	a0002	579	13	11	2	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	a0003	579	12	10	2	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	a0004	579	10	3	3	1	1	2	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	a0005	579	3	3	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR8_chr1_27954973_27973093	1/1	a0001	395	441	94	80	200	18	47	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	a0002	395	1	0	0	0	0	1	copy fasta	XKR8	chr1	27954973	27973093
XKR9_chr8_70664339_70740942	1/1	a0001	373	313	80	57	136	10	28	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	a0002	373	5	5	0	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	a0003	182	2	0	0	2	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	a0004	373	1	0	1	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	a0005	373	1	1	0	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKRX_chrX_100908445_100933917	1/1	a0001	449	293	75	50	125	11	30	copy fasta	XKRX	chrX	100908445	100933917
XKRX_chrX_100908445_100933917	0/0	a0002	123	1	0	0	1	0	0	copy fasta	XKRX	chrX	100908445	100933917
XKRX_chrX_100908445_100933917	0/0	a0003	352	1	0	0	1	0	0	copy fasta	XKRX	chrX	100908445	100933917
XKRX_chrX_100908445_100933917	0/0	a0004	440	1	0	0	1	0	0	copy fasta	XKRX	chrX	100908445	100933917
XKRX_chrX_100908445_100933917	0/0	a0005	449	1	1	0	0	0	0	copy fasta	XKRX	chrX	100908445	100933917
XK_chrX_37680791_37737130	1/1	a0001	444	219	68	37	80	5	27	copy fasta	XK	chrX	37680791	37737130
XNDC1N_chr11_71875704_71933594	1/1	a0001	234	316	71	63	138	8	34	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	a0002	204	9	8	1	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	a0003	204	7	7	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	a0004	204	2	2	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	a0005	234	2	2	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	a0006	234	1	1	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	a0007	234	1	1	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XPA_chr9_97669909_97702340	1/1	a0001	273	405	82	78	185	14	44	copy fasta	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	a0002	273	5	5	0	0	0	0	copy fasta	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	a0003	273	1	1	0	0	0	0	copy fasta	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	a0004	273	1	1	0	0	0	0	copy fasta	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	a0005	273	1	0	0	1	0	0	copy fasta	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	a0006	273	1	1	0	0	0	0	copy fasta	XPA	chr9	97669909	97702340
XPC_chr3_14140147_14183601	0/1	a0001	940	116	58	24	8	4	21	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	1/0	a0002	940	99	15	21	50	4	8	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	a0003	940	91	12	14	56	5	4	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	a0004	940	44	0	10	34	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	a0005	940	5	0	4	0	0	1	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	a0006	940	3	3	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	a0007	940	2	2	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	a0008	940	2	2	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	a0009	940	2	2	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	a0010	940	2	0	0	2	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	a0011	940	1	0	0	0	0	1	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	a0012	940	1	1	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	a0013	940	1	0	1	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	a0014	940	1	1	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	a0015	940	1	0	0	0	1	0	copy fasta	XPC	chr3	14140147	14183601