JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
XPC_chr3_14140147_14183601	0/0	a0016	940	1	0	0	1	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	a0017	940	1	0	0	1	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	a0018	940	1	0	0	0	0	1	copy fasta	XPC	chr3	14140147	14183601
XPNPEP1_chr10_109859766_109928511	1/1	a0001	666	340	88	58	150	10	32	copy fasta	XPNPEP1	chr10	109859766	109928511
XPNPEP1_chr10_109859766_109928511	0/0	a0002	666	2	2	0	0	0	0	copy fasta	XPNPEP1	chr10	109859766	109928511
XPNPEP1_chr10_109859766_109928511	0/0	a0003	666	1	0	0	1	0	0	copy fasta	XPNPEP1	chr10	109859766	109928511
XPNPEP1_chr10_109859766_109928511	0/0	a0004	666	1	0	0	1	0	0	copy fasta	XPNPEP1	chr10	109859766	109928511
XPNPEP2_chrX_129733979_129774536	1/1	a0001	674	278	74	49	116	9	28	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0002	674	3	2	1	0	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0003	674	3	0	0	2	0	1	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0004	674	2	2	0	0	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0005	26	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0006	674	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0007	242	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0008	242	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0009	242	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0010	258	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0011	309	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0012	674	1	0	0	0	0	1	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0013	319	1	0	0	0	0	1	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0014	393	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0015	424	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0016	444	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0017	444	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0018	487	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0019	487	1	0	0	0	0	1	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0020	533	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0021	482	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0022	483	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0023	674	1	1	0	0	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0024	393	1	1	0	0	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0025	349	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0026	187	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0027	156	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	a0028	121	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP3_chr22_40852148_40937815	1/1	a0001	507	246	82	40	84	10	28	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	a0002	507	1	0	0	1	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	a0003	507	1	0	0	1	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPO1_chr2_61472849_61543356	1/1	a0001	1071	318	82	60	136	12	26	copy fasta	XPO1	chr2	61472849	61543356
XPO4_chr13_20772329_20907746	1/1	a0001	1151	284	92	56	80	16	38	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	a0002	1151	4	0	0	4	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	a0003	1151	3	0	3	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	a0004	1151	1	0	1	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO5_chr6_43517334_43581038	1/1	a0001	1204	224	77	39	72	8	26	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	a0002	1204	8	8	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	a0003	1204	5	0	4	0	0	1	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	a0004	1204	2	2	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	a0005	1204	2	2	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	a0006	1204	1	0	1	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	a0007	1204	1	1	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038