JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
XPO5_chr6_43517334_43581038	0/0	a0008	1204	1	0	0	0	0	1	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	a0009	1204	1	1	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	a0010	1204	1	1	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO6_chr16_28092976_28216965	1/1	a0001	1125	303	89	51	119	14	28	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	a0002	1125	1	0	1	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	a0003	1125	1	1	0	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	a0004	1125	1	1	0	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	a0005	1125	1	1	0	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	a0006	1125	1	0	0	1	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO7_chr8_21914662_22011585	1/1	a0001	1087	339	86	63	144	12	32	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	a0002	1087	1	0	1	0	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	a0003	1087	1	1	0	0	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	a0004	1087	1	1	0	0	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPOT_chr12_64399392_64456125	1/1	a0001	962	380	91	50	185	12	40	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	a0002	962	1	0	0	1	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	a0003	962	1	1	0	0	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPR1_chr1_180627022_180895279	1/1	a0001	696	329	88	66	131	12	30	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	a0002	696	1	0	0	1	0	0	copy fasta	XPR1	chr1	180627022	180895279
XRCC1_chr19_43538311_43580527	0/1	a0001	633	202	58	37	76	12	18	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	1/0	a0002	633	94	9	15	47	5	17	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	a0003	633	77	5	12	53	0	7	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	a0004	633	24	2	1	17	1	3	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	a0005	633	8	8	0	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	a0006	633	7	1	5	0	0	1	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	a0007	633	6	4	2	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	a0008	633	6	6	0	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	a0009	633	1	0	0	0	0	1	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	a0010	633	1	1	0	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	a0011	633	1	0	0	0	0	1	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	a0012	633	1	0	0	1	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC2_chr7_152639776_152681141	1/1	a0001	280	380	88	74	174	7	35	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	a0002	280	12	0	4	0	1	7	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	a0003	280	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	a0004	280	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC3_chr14_103692617_103720451	1/0	a0001	346	313	60	57	152	8	35	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/1	a0002	346	76	20	18	20	6	11	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	a0003	346	3	3	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	a0004	346	1	0	0	1	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	a0005	346	1	1	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	a0006	346	1	1	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	a0007	346	1	1	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	a0008	346	1	1	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	a0009	346	1	0	1	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	a0010	346	1	1	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	a0011	346	1	0	0	1	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC4_chr5_83072547_83358760	1/1	a0001	334	235	75	42	86	3	27	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	a0002	334	18	0	0	16	1	1	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	a0003	334	3	1	2	0	0	0	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	a0004	334	2	2	0	0	0	0	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	a0005	334	2	2	0	0	0	0	copy fasta	XRCC4	chr5	83072547	83358760