JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
XRCC4_chr5_83072547_83358760	0/0	a0006	334	2	2	0	0	0	0	copy fasta	XRCC4	chr5	83072547	83358760
XRCC5_chr2_216104348_216211293	1/1	a0001	732	349	95	66	130	14	42	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	0/0	a0002	732	1	0	0	1	0	0	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	0/0	a0003	732	1	0	0	1	0	0	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	0/0	a0004	732	1	1	0	0	0	0	copy fasta	XRCC5	chr2	216104348	216211293
XRCC6_chr22_41616295_41669041	1/1	a0001	609	323	88	62	121	14	36	copy fasta	XRCC6	chr22	41616295	41669041
XRCC6_chr22_41616295_41669041	0/0	a0002	609	1	0	0	1	0	0	copy fasta	XRCC6	chr22	41616295	41669041
XRN1_chr3_142301610_142453037	1/1	a0001	1694	262	68	49	110	11	22	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	a0002	1694	37	4	7	19	3	4	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	a0003	1694	5	0	0	5	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	a0004	1694	5	5	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	a0005	1694	3	2	1	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	a0006	1694	2	0	0	2	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	a0007	1694	1	1	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	a0008	1694	1	0	0	0	0	1	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	a0009	1694	1	1	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	a0010	1694	1	0	1	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	a0011	1694	1	1	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	a0012	1694	1	1	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	a0013	1694	1	0	0	0	0	1	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	a0014	1694	1	1	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	a0015	1694	1	0	1	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	a0016	1694	1	0	1	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN2_chr20_21298331_21394825	1/1	a0001	950	275	84	46	105	14	24	copy fasta	XRN2	chr20	21298331	21394825
XRN2_chr20_21298331_21394825	0/0	a0002	950	2	2	0	0	0	0	copy fasta	XRN2	chr20	21298331	21394825
XRN2_chr20_21298331_21394825	0/0	a0003	950	1	0	0	1	0	0	copy fasta	XRN2	chr20	21298331	21394825
XRRA1_chr11_74835910_74954091	1/0	a0001	800	210	46	37	85	10	31	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/1	a0002	800	87	6	17	54	3	6	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0003	800	8	8	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0004	800	7	7	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0005	800	7	7	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0006	800	5	5	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0007	800	4	4	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0008	800	3	3	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0009	800	2	2	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0010	800	2	2	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0011	800	1	1	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0012	800	1	0	0	0	1	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0013	800	1	0	0	0	0	1	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0014	800	1	1	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0015	800	1	0	1	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0016	800	1	0	0	1	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0017	800	1	0	0	1	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0018	800	1	1	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0019	800	1	0	0	1	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0020	800	1	1	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	a0021	800	1	0	1	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XXYLT1_chr3_195063284_195276159	1/1	a0001	393	191	75	33	53	4	24	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	a0002	393	6	0	1	5	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	a0003	393	1	1	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159