JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BTNL2_chr6_32388339_32412181	0/0	a0003	245	49	18	5	24	0	2	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	a0004	453	45	0	0	39	0	6	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	a0005	482	22	0	5	12	3	2	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	a0006	245	17	0	1	15	0	1	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	a0007	482	15	0	1	14	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	a0008	283	5	2	3	0	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	a0009	245	2	2	0	0	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	a0010	482	1	0	0	1	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	a0011	245	1	0	1	0	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	a0012	482	1	1	0	0	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	a0013	482	1	0	1	0	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	a0014	482	1	0	0	1	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	a0015	482	1	0	0	1	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	a0016	482	1	0	1	0	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	a0017	482	1	0	0	0	0	1	copy fasta	BTNL2	chr6	32388339	32412181
BTNL3_chr5_180983846_181011727	1/1	a0001	466	160	45	28	48	6	31	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	a0002	466	21	12	1	4	0	4	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	a0003	466	6	0	0	6	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	a0004	466	5	4	1	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	a0005	466	2	2	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	a0006	466	2	0	0	0	0	2	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	a0007	466	2	2	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	a0008	466	2	2	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	a0009	466	2	2	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	a0010	466	2	2	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	a0011	466	1	0	0	0	0	1	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	a0012	466	1	1	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL8_chr5_180894159_180955906	1/1	a0001	500	78	15	19	27	4	11	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	a0002	500	43	25	4	9	1	4	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	a0003	500	28	5	1	14	0	8	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	a0004	500	17	0	5	4	1	7	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	a0005	500	6	6	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	a0006	500	3	3	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	a0007	500	3	2	1	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	a0008	500	2	2	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	a0009	500	2	2	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	a0010	500	2	0	0	2	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	a0011	500	1	1	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	a0012	500	1	1	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	a0013	500	1	0	0	0	0	1	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	a0014	500	1	1	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	a0015	500	1	1	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	a0016	500	1	0	0	0	0	1	copy fasta	BTNL8	chr5	180894159	180955906
BTNL9_chr5_181035266_181066521	0/1	a0001	535	246	48	42	104	11	40	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	1/0	a0002	535	130	11	38	68	7	5	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	a0003	535	3	3	0	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	a0004	535	2	0	0	2	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	a0005	535	2	0	2	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	a0006	535	1	0	0	1	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	a0007	535	1	0	0	1	0	0	copy fasta	BTNL9	chr5	181035266	181066521