JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
XYLB_chr3_38341785_38419985	1/1	a0001	536	246	66	51	90	6	31	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	a0002	536	79	6	16	43	4	10	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	a0003	536	7	7	0	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	a0004	536	7	5	2	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	a0005	536	5	5	0	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	a0006	536	3	1	2	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	a0007	475	3	0	0	3	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	a0008	536	2	1	0	1	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	a0009	536	2	2	0	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	a0010	536	1	0	0	1	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	a0011	536	1	1	0	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	a0012	449	1	0	1	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	a0013	536	1	0	0	0	0	1	copy fasta	XYLB	chr3	38341785	38419985
XYLT1_chr16_17096769_17475960	1/1	a0001	959	105	36	35	11	7	14	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	a0002	959	15	12	0	1	0	2	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	a0003	959	7	7	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	a0004	959	6	5	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	a0005	959	6	6	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	a0006	959	5	4	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	a0007	959	4	4	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	a0008	959	1	0	0	0	0	1	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	a0009	959	1	0	0	0	1	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	a0010	959	1	0	0	0	0	1	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	a0011	959	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	a0012	959	1	0	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	a0013	959	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	a0014	959	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	a0015	959	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT2_chr17_50341126_50366185	1/0	a0001	865	205	56	31	80	7	30	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/1	a0002	865	74	18	19	20	4	12	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	a0003	865	52	1	22	23	4	2	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	a0004	865	9	6	3	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	a0005	865	6	5	1	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	a0006	865	2	2	0	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	a0007	865	2	0	2	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	a0008	865	1	1	0	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	a0009	865	1	0	0	0	0	1	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	a0010	865	1	0	0	0	0	1	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	a0011	865	1	1	0	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	a0012	865	1	1	0	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	a0013	865	1	1	0	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	a0014	865	1	0	0	0	1	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	a0015	865	1	0	0	1	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	a0016	865	1	0	0	1	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	a0017	865	1	0	0	1	0	0	copy fasta	XYLT2	chr17	50341126	50366185
YAE1_chr7_39561404_39577881	1/0	a0001	226	366	67	72	168	18	40	copy fasta	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	a0002	226	71	25	6	34	0	6	copy fasta	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	a0003	226	5	0	0	5	0	0	copy fasta	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/1	a0004	226	5	4	0	0	0	0	copy fasta	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	a0005	226	3	0	0	3	0	0	copy fasta	YAE1	chr7	39561404	39577881