JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
YAF2_chr12_42152104_42243248	1/1	a0001	180	374	88	68	168	12	36	copy fasta	YAF2	chr12	42152104	42243248
YAP1_chr11_102105447_102238424	1/1	a0001	504	320	87	64	132	7	28	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	a0002	504	1	1	0	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	a0003	504	1	0	0	0	1	0	copy fasta	YAP1	chr11	102105447	102238424
YARS1_chr1_32770239_32822358	1/1	a0001	528	326	80	58	129	16	41	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	a0002	528	2	2	0	0	0	0	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	a0003	528	1	1	0	0	0	0	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	a0004	528	1	0	0	1	0	0	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	a0005	528	1	1	0	0	0	0	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	a0006	528	1	0	0	0	0	1	copy fasta	YARS1	chr1	32770239	32822358
YARS2_chr12_32741544_32760897	1/1	a0001	477	337	77	73	138	11	36	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	a0002	477	50	19	9	14	3	5	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	a0003	477	4	0	0	1	0	3	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	a0004	477	2	0	0	2	0	0	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	a0005	477	1	0	0	1	0	0	copy fasta	YARS2	chr12	32741544	32760897
YBEY_chr21_46281342_46302751	1/1	a0001	167	398	97	73	166	17	43	copy fasta	YBEY	chr21	46281342	46302751
YBEY_chr21_46281342_46302751	0/0	a0002	167	4	0	3	0	1	0	copy fasta	YBEY	chr21	46281342	46302751
YBEY_chr21_46281342_46302751	0/0	a0003	167	1	0	0	0	0	1	copy fasta	YBEY	chr21	46281342	46302751
YBEY_chr21_46281342_46302751	0/0	a0004	167	1	1	0	0	0	0	copy fasta	YBEY	chr21	46281342	46302751
YBX1_chr1_42677418_42708805	1/1	a0001	324	394	84	69	181	14	44	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	a0002	295	7	2	2	3	0	0	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	a0003	324	1	0	1	0	0	0	copy fasta	YBX1	chr1	42677418	42708805
YBX2_chr17_7283263_7299639	0/0	a0001	364	173	55	14	91	4	9	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	a0002	364	138	24	42	43	11	18	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	1/1	a0003	364	102	9	17	55	3	16	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	a0004	364	14	2	6	6	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	a0005	364	2	1	0	0	0	1	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	a0006	364	2	0	0	2	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	a0007	363	1	0	0	1	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	a0008	364	1	0	0	1	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	a0009	364	1	0	0	1	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	a0010	364	1	0	0	1	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	a0011	358	1	1	0	0	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	a0012	358	1	1	0	0	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	a0013	364	1	0	0	1	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	a0014	364	1	1	0	0	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	a0015	364	1	0	1	0	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX3_chr12_10694089_10728323	1/1	a0001	372	254	57	53	101	16	25	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	a0002	372	156	15	21	101	2	17	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	a0003	373	17	17	0	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	a0004	372	2	2	0	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	a0005	372	2	0	0	2	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	a0006	372	2	0	2	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	a0007	372	1	1	0	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	a0008	372	1	0	0	1	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	a0009	372	1	0	1	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	a0010	372	1	0	1	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	a0011	372	1	0	0	1	0	0	copy fasta	YBX3	chr12	10694089	10728323
YDJC_chr22_21623089_21635022	1/1	a0001	323	294	82	54	111	11	34	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	a0002	323	106	3	17	73	3	10	copy fasta	YDJC	chr22	21623089	21635022