JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
YDJC_chr22_21623089_21635022	0/0	a0003	323	11	10	1	0	0	0	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	a0004	323	3	3	0	0	0	0	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	a0005	323	1	0	0	1	0	0	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	a0006	323	1	0	0	1	0	0	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	a0007	323	1	0	0	0	0	1	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	a0008	323	1	0	0	0	0	1	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	a0009	323	1	0	0	1	0	0	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	a0010	323	1	0	0	1	0	0	copy fasta	YDJC	chr22	21623089	21635022
YEATS2_chr3_183692797_183817624	1/0	a0001	1422	133	38	37	38	6	13	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/1	a0002	1421	115	22	25	52	6	9	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0003	1422	20	0	0	18	0	2	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0004	745	7	0	4	3	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0005	1422	4	3	0	0	0	1	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0006	1421	4	0	0	4	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0007	1423	4	4	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0008	1422	4	4	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0009	745	2	2	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0010	1422	2	0	0	0	2	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0011	1421	2	2	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0012	1421	2	1	1	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0013	1421	1	1	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0014	1422	1	0	0	1	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0015	1421	1	0	0	0	0	1	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0016	1422	1	0	0	0	0	1	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0017	1421	1	0	1	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0018	1421	1	0	0	1	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0019	1422	1	1	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0020	1421	1	0	0	1	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0021	745	1	1	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0022	1423	1	0	0	0	0	1	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	a0023	1422	1	1	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS4_chr12_69354743_69395870	1/1	a0001	227	404	90	68	184	16	44	copy fasta	YEATS4	chr12	69354743	69395870
YES1_chr18_716588_817242	1/1	a0001	543	371	91	65	163	10	40	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	a0002	543	4	0	1	3	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	a0003	543	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YIF1A_chr11_66279580_66294143	1/1	a0001	293	431	93	77	204	15	40	copy fasta	YIF1A	chr11	66279580	66294143
YIF1A_chr11_66279580_66294143	0/0	a0002	293	2	0	1	0	1	0	copy fasta	YIF1A	chr11	66279580	66294143
YIF1A_chr11_66279580_66294143	0/0	a0003	293	2	0	0	2	0	0	copy fasta	YIF1A	chr11	66279580	66294143
YIF1A_chr11_66279580_66294143	0/0	a0004	293	1	0	0	0	0	1	copy fasta	YIF1A	chr11	66279580	66294143
YIF1A_chr11_66279580_66294143	0/0	a0005	293	1	0	0	0	0	1	copy fasta	YIF1A	chr11	66279580	66294143
YIF1A_chr11_66279580_66294143	0/0	a0006	293	1	1	0	0	0	0	copy fasta	YIF1A	chr11	66279580	66294143
YIF1B_chr19_38298558_38320947	0/0	a0000	0	9	0	1	7	0	1	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	1/1	a0001	314	331	80	63	137	15	34	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	a0002	314	59	5	9	39	1	5	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	a0003	49	1	0	1	0	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	a0004	314	1	1	0	0	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	a0005	314	1	0	0	1	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIPF1_chr1_53846733_53894797	1/1	a0001	306	357	83	72	138	18	44	copy fasta	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	a0002	306	1	1	0	0	0	0	copy fasta	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	a0003	306	1	0	0	1	0	0	copy fasta	YIPF1	chr1	53846733	53894797