JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
YIPF1_chr1_53846733_53894797	0/0	a0004	306	1	0	0	1	0	0	copy fasta	YIPF1	chr1	53846733	53894797
YIPF2_chr19_10917193_10933639	1/1	a0001	316	412	89	72	188	14	47	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	a0002	316	1	0	0	1	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	a0003	316	1	0	1	0	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	a0004	316	1	0	1	0	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	a0005	316	1	0	0	1	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	a0006	316	1	1	0	0	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	a0007	316	1	0	0	0	0	1	copy fasta	YIPF2	chr19	10917193	10933639
YIPF3_chr6_43506832_43521926	1/1	a0001	350	383	100	72	152	16	41	copy fasta	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	a0002	350	2	0	0	2	0	0	copy fasta	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	a0003	350	1	0	0	0	0	1	copy fasta	YIPF3	chr6	43506832	43521926
YIPF4_chr2_32272904_32321594	1/1	a0001	244	396	93	74	177	14	36	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	a0002	244	1	1	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	a0003	244	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF5_chr5_144153162_144175659	1/1	a0001	257	437	95	71	207	18	44	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	a0002	257	1	1	0	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	a0003	257	1	0	1	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	a0004	257	1	0	0	1	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF6_chrX_68494051_68542282	1/1	a0001	236	225	57	37	100	9	20	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	a0002	94	1	0	0	1	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	a0003	236	1	1	0	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF7_chr4_44617088_44656625	1/1	a0001	256	330	87	57	131	15	38	copy fasta	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	a0002	256	76	3	17	53	1	2	copy fasta	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	a0003	256	2	0	0	2	0	0	copy fasta	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	a0004	67	1	1	0	0	0	0	copy fasta	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	a0005	256	1	1	0	0	0	0	copy fasta	YIPF7	chr4	44617088	44656625
YJEFN3_chr19_19523911_19542581	1/1	a0001	299	326	86	62	114	17	45	copy fasta	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	a0002	299	4	0	0	4	0	0	copy fasta	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	a0003	299	3	3	0	0	0	0	copy fasta	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	a0004	299	2	0	2	0	0	0	copy fasta	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	a0005	299	2	2	0	0	0	0	copy fasta	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	a0006	299	1	0	0	0	1	0	copy fasta	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	a0007	299	1	0	0	0	0	1	copy fasta	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	a0008	299	1	1	0	0	0	0	copy fasta	YJEFN3	chr19	19523911	19542581
YJU2B_chr19_13742895_13768289	1/1	a0001	396	401	76	75	192	15	41	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	a0002	396	23	22	1	0	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	a0003	396	2	1	0	1	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	a0004	396	1	0	0	0	1	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	a0005	396	1	0	1	0	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	a0006	396	1	0	1	0	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	a0007	396	1	1	0	0	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	a0008	220	1	0	0	1	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	a0009	396	1	0	0	0	0	1	copy fasta	YJU2B	chr19	13742895	13768289
YJU2_chr19_4242080_4274088	1/1	a0001	323	380	93	59	172	10	44	copy fasta	YJU2	chr19	4242080	4274088
YJU2_chr19_4242080_4274088	0/0	a0002	323	1	0	0	1	0	0	copy fasta	YJU2	chr19	4242080	4274088
YJU2_chr19_4242080_4274088	0/0	a0003	323	1	0	1	0	0	0	copy fasta	YJU2	chr19	4242080	4274088
YJU2_chr19_4242080_4274088	0/0	a0004	323	1	1	0	0	0	0	copy fasta	YJU2	chr19	4242080	4274088
YJU2_chr19_4242080_4274088	0/0	a0005	39	1	0	0	1	0	0	copy fasta	YJU2	chr19	4242080	4274088
YKT6_chr7_44195978_44219294	1/1	a0001	198	418	94	76	190	16	40	copy fasta	YKT6	chr7	44195978	44219294
YLPM1_chr14_74758316_74842318	1/0	a0001	2146	310	77	54	144	7	27	copy fasta	YLPM1	chr14	74758316	74842318