JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
YLPM1_chr14_74758316_74842318	0/1	a0002	2146	6	0	3	0	2	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	a0003	2146	5	1	2	0	1	1	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	a0004	2146	4	4	0	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	a0005	2146	4	4	0	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	a0006	2146	1	0	1	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	a0007	2146	1	1	0	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	a0008	2146	1	0	0	1	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	a0009	2146	1	1	0	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	a0010	2146	1	0	0	1	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	a0011	2146	1	0	1	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	a0012	2146	1	0	1	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YME1L1_chr10_27105111_27159384	1/1	a0001	716	381	82	74	179	12	32	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	a0002	716	5	3	2	0	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	a0003	716	1	1	0	0	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	a0004	716	1	0	0	1	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YOD1_chr1_207038849_207056208	1/1	a0001	348	399	100	77	166	18	36	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	a0002	348	1	0	1	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	a0003	348	1	0	0	1	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	a0004	348	1	0	0	1	0	0	copy fasta	YOD1	chr1	207038849	207056208
YPEL1_chr22_21692536_21740794	1/1	a0001	119	372	92	66	162	12	38	copy fasta	YPEL1	chr22	21692536	21740794
YPEL2_chr17_59326655_59406729	1/1	a0001	119	350	90	64	146	10	38	copy fasta	YPEL2	chr17	59326655	59406729
YPEL3_chr16_30087314_30101213	1/1	a0001	157	376	80	69	169	10	46	copy fasta	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	a0002	157	1	0	1	0	0	0	copy fasta	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	a0003	157	1	0	0	1	0	0	copy fasta	YPEL3	chr16	30087314	30101213
YPEL4_chr11_57640087_57654912	0/0	a0000	0	1	0	0	0	0	1	copy fasta	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	1/1	a0001	127	327	96	70	106	14	39	copy fasta	YPEL4	chr11	57640087	57654912
YPEL5_chr2_30142007_30165533	1/1	a0001	121	404	92	66	186	14	44	copy fasta	YPEL5	chr2	30142007	30165533
YRDC_chr1_37797945_37813208	1/1	a0001	279	413	84	74	197	14	42	copy fasta	YRDC	chr1	37797945	37813208
YRDC_chr1_37797945_37813208	0/0	a0002	279	2	0	0	2	0	0	copy fasta	YRDC	chr1	37797945	37813208
YRDC_chr1_37797945_37813208	0/0	a0003	279	1	0	0	1	0	0	copy fasta	YRDC	chr1	37797945	37813208
YTHDC1_chr4_68305387_68355090	0/1	a0001	727	336	86	63	134	16	36	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	a0002	727	47	0	4	42	0	1	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	a0003	727	1	0	0	1	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	a0004	727	1	0	0	0	0	1	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	a0005	732	1	0	0	1	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	a0006	727	1	0	1	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC2_chr5_113508694_113600284	1/0	a0001	1430	101	2	22	57	7	12	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	a0002	1430	99	44	15	36	0	4	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/1	a0003	1430	78	26	16	25	4	6	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	a0004	1430	21	0	2	9	2	8	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	a0005	1430	7	0	5	0	1	1	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	a0006	1430	2	2	0	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	a0007	1430	1	1	0	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	a0008	1430	1	0	1	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	a0009	1430	1	0	0	1	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	a0010	1430	1	0	0	1	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	a0011	1430	1	1	0	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	a0012	1430	1	0	0	0	0	1	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	a0013	1430	1	0	1	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	a0014	1430	1	0	0	1	0	0	copy fasta	YTHDC2	chr5	113508694	113600284