JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
YTHDF1_chr20_63190429_63221131	1/1	a0001	559	366	87	60	154	18	45	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	a0002	559	3	0	0	0	0	3	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	a0003	559	3	3	0	0	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	a0004	559	2	0	0	2	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	a0005	559	1	0	0	1	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	a0006	559	1	0	0	1	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	a0007	559	1	1	0	0	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	a0008	559	1	1	0	0	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF2_chr1_28731940_28774775	1/1	a0001	579	287	88	70	87	12	28	copy fasta	YTHDF2	chr1	28731940	28774775
YTHDF2_chr1_28731940_28774775	0/0	a0002	579	4	4	0	0	0	0	copy fasta	YTHDF2	chr1	28731940	28774775
YTHDF2_chr1_28731940_28774775	0/0	a0003	579	1	0	0	1	0	0	copy fasta	YTHDF2	chr1	28731940	28774775
YTHDF3_chr8_63163621_63217786	1/1	a0001	585	370	83	66	176	11	32	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	a0002	585	3	1	0	0	1	1	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	a0003	585	1	0	0	0	0	1	copy fasta	YTHDF3	chr8	63163621	63217786
YWHAB_chr20_44880705_44913532	1/1	a0001	246	364	84	78	146	16	38	copy fasta	YWHAB	chr20	44880705	44913532
YWHAE_chr17_1339275_1405222	0/1	a0001	255	373	94	76	142	16	44	copy fasta	YWHAE	chr17	1339275	1405222
YWHAG_chr7_76321799_76363991	1/1	a0001	247	383	94	62	173	12	40	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	a0002	247	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAH_chr22_31939535_31962603	1/1	a0001	246	408	92	78	178	14	44	copy fasta	YWHAH	chr22	31939535	31962603
YWHAQ_chr2_9578967_9635997	1/1	a0001	245	272	96	64	64	16	30	copy fasta	YWHAQ	chr2	9578967	9635997
YWHAZ_chr8_100911523_100957020	1/1	a0001	245	392	92	74	164	16	44	copy fasta	YWHAZ	chr8	100911523	100957020
YY1AP1_chr1_155654454_155693774	1/1	a0001	750	254	68	41	100	11	32	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	a0002	750	10	10	0	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	a0003	750	3	3	0	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	a0004	750	3	3	0	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	a0005	750	3	0	3	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	a0006	750	2	0	0	2	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	a0007	750	1	1	0	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	a0008	750	1	1	0	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	a0009	750	1	0	0	0	1	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1_chr14_100234144_100287788	1/1	a0001	414	345	88	72	135	12	36	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	a0002	414	2	2	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	a0003	408	1	0	0	1	0	0	copy fasta	YY1	chr14	100234144	100287788
YY2_chrX_21850987_21863740	1/1	a0001	372	323	75	50	154	11	31	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	a0002	372	1	1	0	0	0	0	copy fasta	YY2	chrX	21850987	21863740
ZACN_chr17_76074182_76087806	0/1	a0001	412	193	53	34	76	7	22	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	1/0	a0002	412	98	23	20	46	3	5	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	a0003	280	87	9	16	52	5	5	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	a0004	412	3	3	0	0	0	0	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	a0005	412	2	0	1	0	1	0	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	a0006	412	2	2	0	0	0	0	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	a0007	412	1	1	0	0	0	0	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	a0008	280	1	0	0	0	0	1	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	a0009	280	1	0	0	1	0	0	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	a0010	412	1	1	0	0	0	0	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	a0011	412	1	0	0	0	0	1	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	a0012	412	1	0	0	1	0	0	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	a0013	412	1	0	1	0	0	0	copy fasta	ZACN	chr17	76074182	76087806
ZAN_chr7_100728595_100802797	0/0	a0001	1882	68	1	9	48	1	9	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	a0002	2553	32	8	6	13	3	2	copy fasta	ZAN	chr7	100728595	100802797