JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZAN_chr7_100728595_100802797	0/0	a0053	2812	1	0	0	1	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	a0054	1882	1	0	0	1	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	a0055	1897	1	0	0	0	0	1	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	a0056	1939	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	a0057	1939	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	a0058	1939	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	a0059	1939	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	a0060	1939	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	a0061	1939	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAP70_chr2_97708576_97744860	1/1	a0001	619	365	100	69	146	16	32	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	a0002	619	1	0	0	1	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	a0003	619	1	0	0	1	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	a0004	619	1	0	1	0	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAR1L_chr13_32298699_32320363	1/1	a0001	321	265	61	48	108	10	36	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	a0002	321	200	28	38	112	8	14	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	a0003	321	6	6	0	0	0	0	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	a0004	321	1	1	0	0	0	0	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	a0005	321	1	0	0	1	0	0	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	a0006	321	1	0	0	1	0	0	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1_chr4_48485252_48499389	0/0	a0001	424	228	76	33	83	6	30	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/1	a0002	424	150	14	37	77	8	13	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	1/0	a0003	424	7	5	1	0	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	a0004	424	1	0	0	1	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	a0005	424	1	0	0	1	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	a0006	424	1	0	0	0	0	1	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	a0007	424	1	0	0	1	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	a0008	424	1	0	0	1	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	a0009	424	1	0	0	1	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	a0010	424	1	0	0	1	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	a0011	424	1	1	0	0	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	a0012	424	1	0	1	0	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	a0013	424	1	1	0	0	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	a0014	424	1	1	0	0	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZBBX_chr3_167234843_167385297	1/0	a0001	839	83	31	17	24	5	5	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0002	839	78	18	16	32	3	9	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0003	839	52	2	14	18	5	13	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0004	839	23	22	1	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0005	839	12	0	3	9	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/1	a0006	839	9	0	3	0	2	3	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0007	839	7	7	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0008	839	6	4	2	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0009	839	4	0	4	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0010	839	2	0	0	2	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0011	839	2	2	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0012	839	1	1	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0013	839	1	1	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0014	839	1	0	0	1	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0015	839	1	0	1	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0016	839	1	1	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0017	839	1	1	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297