JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZBBX_chr3_167234843_167385297	0/0	a0018	839	1	1	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0019	839	1	0	0	0	1	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0020	839	1	1	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0021	839	1	0	0	1	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0022	839	1	0	0	1	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	a0023	839	1	0	1	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBED1_chrX_2481435_2505976	1/1	a0001	694	213	57	48	80	9	17	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	a0002	694	3	0	0	3	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	a0003	87	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	a0004	694	1	1	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	a0005	688	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	a0006	160	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	a0007	93	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED2_chr3_111587900_111600346	1/1	a0001	218	432	90	79	199	14	48	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	a0002	218	5	5	0	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	a0003	218	1	1	0	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	a0004	218	1	0	1	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	a0005	218	1	0	1	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	a0006	218	1	0	0	1	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	a0007	218	1	0	1	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED3_chr5_77067072_77092285	1/1	a0001	234	346	83	57	151	10	43	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	a0002	234	103	11	26	53	6	7	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	a0003	234	4	3	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	a0004	234	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	a0005	234	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	a0006	234	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED4_chr22_49848844_49895080	0/1	a0001	1171	154	19	25	92	4	13	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	1/0	a0002	1171	145	67	13	40	4	20	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	a0003	1171	3	0	3	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	a0004	1171	3	0	0	0	0	3	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	a0005	1171	2	2	0	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	a0006	1171	2	0	0	2	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	a0007	1171	1	1	0	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	a0008	1171	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	a0009	1171	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	a0010	1171	1	1	0	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	a0011	1171	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	a0012	1171	1	0	1	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	a0013	1171	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED5_chr11_10847706_10863053	1/1	a0001	693	399	84	65	192	15	41	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	a0002	693	8	1	1	3	0	3	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	a0003	693	7	1	4	0	1	1	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	a0004	693	7	6	1	0	0	0	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	a0005	693	1	0	0	0	0	1	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	a0006	693	1	0	0	1	0	0	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	a0007	693	1	0	0	1	0	0	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	a0008	693	1	0	1	0	0	0	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	a0009	693	1	0	0	1	0	0	copy fasta	ZBED5	chr11	10847706	10863053
ZBED6_chr1_203790623_203859124	1/0	a0001	979	185	48	41	63	10	22	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	a0002	979	91	8	24	52	1	6	copy fasta	ZBED6	chr1	203790623	203859124