JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZBED6_chr1_203790623_203859124	0/0	a0003	979	66	17	2	45	1	1	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/1	a0004	979	28	16	5	0	2	4	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	a0005	979	6	0	0	5	0	1	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	a0006	979	2	0	0	2	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	a0007	979	2	2	0	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	a0008	979	1	1	0	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	a0009	979	1	0	0	1	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	a0010	979	1	1	0	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	a0011	979	1	1	0	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBP1_chr20_57598852_57625426	0/0	a0001	429	218	12	46	118	8	34	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/1	a0002	429	122	58	24	26	7	6	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	a0003	429	46	4	3	38	0	1	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	a0004	429	20	0	0	18	0	2	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	a0005	429	18	6	7	0	2	3	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	a0006	429	6	6	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	a0007	429	4	0	2	1	0	1	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	a0008	429	4	4	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	a0009	429	3	3	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	a0010	429	2	2	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	a0011	429	2	1	1	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	a0012	34	2	0	0	0	1	1	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	a0013	444	1	1	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	a0014	429	1	0	1	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	a0015	429	1	0	0	1	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	a0016	429	1	0	0	1	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	1/0	a0017	429	1	0	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	a0018	429	1	1	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	a0019	429	1	1	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	a0020	429	1	0	0	1	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	a0021	429	1	1	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBTB10_chr8_80481226_80531265	1/1	a0001	871	252	90	43	85	7	25	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	a0002	870	28	0	0	25	0	3	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	a0003	871	8	0	2	6	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	a0004	871	2	0	1	0	1	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	a0005	870	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	a0006	871	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	a0007	871	1	0	0	0	0	1	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	a0008	871	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	a0009	871	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	a0010	871	1	0	0	0	0	1	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB11_chr3_101643889_101682132	1/1	a0001	1053	396	91	59	195	14	35	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	a0002	1053	13	0	5	8	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	a0003	1053	1	0	0	1	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	a0004	1053	1	1	0	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	a0005	1053	1	0	1	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	a0006	1053	1	0	0	0	0	1	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	a0007	1053	1	0	1	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB12_chr6_31894613_31907086	0/1	a0001	459	390	91	81	155	18	44	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	a0002	459	26	0	3	21	0	2	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	a0003	459	1	1	0	0	0	0	copy fasta	ZBTB12	chr6	31894613	31907086