JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BTNL9_chr5_181035266_181066521	0/0	a0008	535	1	0	0	1	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	a0009	535	1	1	0	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	a0010	535	1	1	0	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	a0011	535	1	0	0	0	0	1	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	a0012	535	1	0	0	1	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTRC_chr10_101349165_101562313	1/1	a0001	605	254	56	62	93	11	30	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	a0002	605	5	0	0	5	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	a0003	605	4	1	2	0	1	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	a0004	605	1	1	0	0	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	a0005	605	1	0	0	1	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	a0006	605	1	0	0	1	0	0	copy fasta	BTRC	chr10	101349165	101562313
BUB1B_chr15_40156069_40226123	0/0	a0001	1050	177	34	28	79	10	26	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	1/1	a0002	1050	121	11	24	70	2	12	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	a0003	1050	28	27	1	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	a0004	1050	9	7	2	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	a0005	1050	9	8	1	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	a0006	1050	2	0	0	2	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	a0007	1050	1	1	0	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	a0008	1050	1	1	0	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	a0009	1050	1	1	0	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	a0010	1050	1	0	0	1	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	a0011	1050	1	1	0	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	a0012	1050	1	1	0	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1_chr2_110632528_110683063	1/1	a0001	1085	179	66	40	52	2	17	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	a0002	1085	1	0	0	1	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	a0003	1085	1	0	0	0	0	1	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	a0004	1085	1	0	0	1	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB3_chr10_123149402_123175467	1/1	a0001	328	418	92	68	200	16	40	copy fasta	BUB3	chr10	123149402	123175467
BUD13_chr11_116743173_116777987	1/1	a0001	619	360	63	57	193	7	38	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	a0002	619	27	0	11	9	3	4	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	a0003	619	22	10	11	0	1	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	a0004	619	7	6	1	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	a0005	619	6	6	0	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	a0006	619	4	0	0	4	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	a0007	619	4	4	0	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	a0008	619	3	3	0	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	a0009	619	1	0	1	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	a0010	436	1	0	0	1	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	a0011	619	1	0	0	1	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	a0012	619	1	1	0	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	a0013	619	1	1	0	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	a0014	619	1	0	1	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	a0015	619	1	0	0	0	1	0	copy fasta	BUD13	chr11	116743173	116777987
BUD23_chr7_73678597_73703212	1/1	a0001	281	372	92	69	153	16	40	copy fasta	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	a0002	281	1	0	0	1	0	0	copy fasta	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	a0003	281	1	0	1	0	0	0	copy fasta	BUD23	chr7	73678597	73703212
BUD31_chr7_99403969_99424616	1/1	a0001	144	360	94	46	164	16	38	copy fasta	BUD31	chr7	99403969	99424616
BVES_chr6_105091822_105142157	1/1	a0001	360	223	84	35	66	8	28	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	a0002	360	4	0	0	4	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	a0003	360	3	3	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157