JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZBTB12_chr6_31894613_31907086	0/0	a0004	459	1	1	0	0	0	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	a0005	459	1	1	0	0	0	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB14_chr18_5284022_5300726	1/1	a0001	449	392	98	72	162	16	42	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB16_chr11_114054711_114261765	1/1	a0001	673	275	91	64	82	6	30	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	a0002	673	1	0	0	1	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	a0003	673	1	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	a0004	673	1	0	0	1	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB17_chr1_15936869_15981101	1/1	a0001	803	319	87	68	114	14	34	copy fasta	ZBTB17	chr1	15936869	15981101
ZBTB17_chr1_15936869_15981101	0/0	a0002	803	1	1	0	0	0	0	copy fasta	ZBTB17	chr1	15936869	15981101
ZBTB18_chr1_244046283_244062476	1/1	a0001	531	429	98	82	192	18	37	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	a0002	531	1	0	0	0	0	1	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB1_chr14_64499770_64529951	1/1	a0001	713	351	90	60	142	10	47	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	a0002	713	16	2	13	0	0	1	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	a0003	713	1	0	1	0	0	0	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	a0004	713	1	1	0	0	0	0	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	a0005	713	1	1	0	0	0	0	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB20_chr3_114309500_115152288	1/1	a0001	741	86	58	18	0	0	8	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	a0002	741	2	2	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB21_chr21_41981831_42015360	1/0	a0001	1066	297	69	46	138	12	31	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	a0002	1066	35	0	8	20	2	5	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	a0003	1065	22	11	9	0	1	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/1	a0004	1066	21	8	6	1	1	4	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	a0005	1065	5	0	0	5	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	a0006	1067	4	0	0	4	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	a0007	1066	3	2	1	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	a0008	1066	2	2	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	a0009	1066	1	1	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	a0010	1066	1	0	0	1	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	a0011	1066	1	1	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	a0012	1066	1	1	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	a0013	1066	1	0	0	0	0	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	a0014	1066	1	0	0	0	0	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	a0015	1066	1	0	0	1	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	a0016	1066	1	0	0	0	0	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	a0017	1066	1	1	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB22_chr6_33309418_33322744	0/1	a0001	634	200	43	33	101	5	17	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	a0002	634	187	51	35	71	5	25	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	a0003	634	3	0	0	3	0	0	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	a0004	634	2	2	0	0	0	0	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	a0005	634	1	0	0	1	0	0	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB24_chr6_109457594_109488219	1/1	a0001	697	386	61	75	194	16	38	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	a0002	697	35	32	3	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	a0003	697	1	0	0	1	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	a0004	697	1	1	0	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	a0005	697	1	0	0	1	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB25_chr14_64473051_64508838	1/1	a0001	435	353	95	59	144	10	43	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	a0002	435	30	0	12	18	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	a0003	435	1	0	0	0	0	1	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	a0004	435	1	0	1	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	a0005	435	1	1	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838